View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_84 (Length: 210)
Name: NF18678_low_84
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 21471482 - 21471307
Alignment:
| Q |
19 |
acaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaatcggtaaagacgtcaatccttttactaatgttatcccagtaaataa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
21471482 |
acaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaatgtggtaaggacgtcaatccttttactaatgttatcccactaaatat |
21471383 |
T |
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| Q |
119 |
actaaaaagtactctcaaatcgttattatttcatccctatgcccgttatctttcaagcttgtgtggttcatccttt |
194 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
21471382 |
actaaaaagtactctcgaatcgttattatttcatccctatgccagttatctttcaagcttttgtggttcatccttt |
21471307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 21501598 - 21501426
Alignment:
| Q |
19 |
acaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaagacgtcaatccttttactaatgttatcccagtaaata |
117 |
Q |
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|||||||||||||| |||||| ||| || |||||||||||||||||||||||||| |||||| ||| || ||||||||| |||||| ||||| | ||| |
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| T |
21501598 |
acaacagctatgaaatcaataacactacgaaaatttgcataacatggtactaaatgcggtaaggacatctatccttttatcaatgttttcccaccacata |
21501499 |
T |
|
| Q |
118 |
aact-aaaaagtactctcaaatcgttattatttcatccctatgcccgttatctttcaagcttgtgtggttcat |
189 |
Q |
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|||| |||||||| ||| ||||| |||||||||||||| ||||| ||||||||||| ||| |||||||||| |
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| T |
21501498 |
aactaaaaaagtattctgaaatcattattatttcatccacatgccaattatctttcaatcttctgtggttcat |
21501426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 46006296 - 46006184
Alignment:
| Q |
19 |
acaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaagacgtcaatccttttactaatgttatcccagtaaata |
117 |
Q |
| |
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|||||| ||||| | |||||| |||| |||||||||||||| |||||||| |||| |||||| ||| |||||||||||| ||||||| | ||| ||||| |
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| T |
46006296 |
acaacatctatgtaatcaataacacagcaaaaatttgcatatcatggtacaaaatgcggtaaggacatcaatccttttattaatgttttaccaccaaata |
46006197 |
T |
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| Q |
118 |
aactaaaaagtac |
130 |
Q |
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|||||||||||| |
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| T |
46006196 |
tactaaaaagtac |
46006184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 12829551 - 12829475
Alignment:
| Q |
21 |
aacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaagacgtcaatcctttta |
96 |
Q |
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|||||||||| | |||||| |||||||||||||||||||||||||||| |||| |||||| || |||||||||||| |
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| T |
12829551 |
aacagctatgtaatcaataacacaacaaaaatttgcataacatggtacaaaatgcggtaagaacatcaatcctttta |
12829475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 12861530 - 12861454
Alignment:
| Q |
21 |
aacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaagacgtcaatcctttta |
96 |
Q |
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|||||||||| | |||||| |||||||||||||||||||||||||||| |||| |||||| || |||||||||||| |
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| T |
12861530 |
aacagctatgtaatcaataacacaacaaaaatttgcataacatggtacaaaatgcggtaagaacatcaatcctttta |
12861454 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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