View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_85 (Length: 210)
Name: NF18678_low_85
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_85 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 42197929 - 42198138
Alignment:
| Q |
1 |
ccaaccaagtttgcatctgagaaattgtttgtagcaagcctaatatcactgtatgatacattttgaggcaaccaatttagaggagttgatgacaaacttg |
100 |
Q |
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| T |
42197929 |
ccaaccaagtttgcatctgagaaattgtttgtagcaagcctaatatcactgtatgatacattttgaggcaaccaatttagaggagttgatgacaaacttg |
42198028 |
T |
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| Q |
101 |
ttttctccaccttgtgtttctttctttaaggacatttgcagccacagtagatagagaattgacgtgaacaaaacagtagaacctgtaattggtagtatga |
200 |
Q |
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| T |
42198029 |
ttttctccaccttgtgtttctttctttaaggacatttgcagccacagtagatagagaattgacgtgaacaaaacagtagaacctgtaattggtagtatga |
42198128 |
T |
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| Q |
201 |
tagggagtaa |
210 |
Q |
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|||||||||| |
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| T |
42198129 |
tagggagtaa |
42198138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 42210506 - 42210714
Alignment:
| Q |
1 |
ccaaccaagtttgcatctgagaaattgtttgtagcaagcctaatatcactgtatgatacattttgaggcaaccaatttagaggagttgatgacaaacttg |
100 |
Q |
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||||||| |||||| |||| |||||||| ||||||||||||||||||| || |||| ||||||| |||||| |||| || ||||||||||||||||| |
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| T |
42210506 |
ccaaccatatttgcagctgaaaaattgttcgtagcaagcctaatatcaccataggatatattttgatgcaacccttttatagtagttgatgacaaacttg |
42210605 |
T |
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| Q |
101 |
ttttctccaccttgtgtttctttctttaaggacatttgcagccacagtagatagagaattgacgtgaacaaaacagtagaacctgtaattggtagtatga |
200 |
Q |
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| T |
42210606 |
ttttctctgccttgtgtttc-ttctttaaggacattagcagccaaaatagatagatcattgaagcaaacaaaacagccgcacctataatcgctagtatga |
42210704 |
T |
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| Q |
201 |
tagggagtaa |
210 |
Q |
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|||| ||||| |
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| T |
42210705 |
taggtagtaa |
42210714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 42222731 - 42222935
Alignment:
| Q |
1 |
ccaaccaagtttgcatctgagaaattgtttgtagcaagcctaatatcactgtatgatacattttgaggcaaccaatttagaggagttgatgacaaacttg |
100 |
Q |
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||||||||||||| | |||| || ||||||||||||||| ||||||||| || |||| |||||||| ||||| ||||| |||||||||||| ||| |
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| T |
42222731 |
ccaaccaagtttgtagctgaaaagttgtttgtagcaagcttaatatcaccataggatatattttgagtcaaccccaatagagtggttgatgacaaaattg |
42222830 |
T |
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| Q |
101 |
ttttctccaccttgtgtttctttctttaaggacatttgcagccacagtagatagagaattgacgtgaacaaaacagtagaacctgtaattggtagtatga |
200 |
Q |
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|||||||| ||||| | ||||| ||| || |||| | |||||||| |||||||| ||||||||||| ||||||||| |||||||||| |||||||| |
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| T |
42222831 |
ttttctcctccttgcgcttctt-cttggagaacataagtagccacagcagatagagcattgacgtgaataaaacagtaccgcctgtaattgctagtatga |
42222929 |
T |
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| Q |
201 |
taggga |
206 |
Q |
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||||| |
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| T |
42222930 |
caggga |
42222935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 33701289 - 33701167
Alignment:
| Q |
87 |
tgatgacaaacttgttttctccaccttgtgtttctttctttaaggacatttgcagccacagtagatagagaattgacgtgaacaaaacagtagaacctgt |
186 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| | |||||||| ||||| | ||||||||||| || |||| | |
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| T |
33701289 |
tgatgacaaacttgttttctccgccttgtgtttctt-ctttaaggacattagcagccaaaatagatagatcattgaagcgaacaaaacagcagcacctat |
33701191 |
T |
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| Q |
187 |
aattggtagtatgatagggagtaa |
210 |
Q |
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||| | |||||||||||| ||||| |
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| T |
33701190 |
aatcgctagtatgataggtagtaa |
33701167 |
T |
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