View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_low_9 (Length: 598)

Name: NF18678_low_9
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_low_9
NF18678_low_9
[»] chr4 (6 HSPs)
chr4 (19-421)||(30717622-30718021)
chr4 (19-152)||(30894468-30894602)
chr4 (500-585)||(30718099-30718184)
chr4 (353-421)||(30894286-30894354)
chr4 (500-585)||(30894125-30894210)
chr4 (261-317)||(30894355-30894411)
[»] chr1 (1 HSPs)
chr1 (158-197)||(1619466-1619505)


Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 30717622 - 30718021
Alignment:
Q  19 ctgcaacagcttcctccaccgtcagcacagcaaacgcggaaatgctctcggaaagcgtagatcgtggtagatccaccagatcgatcgcgtccacagcatc 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717622 ctgcaacagcttcctccaccgtcagcacagcgaacgcggaaatgctctcggaaagcgtagatcgtggtagatccaccagatcgatcgcgtccacagcatc 30717721  T
Q  119 agtcaacactttctgcaaattagatccaaaatcagtttcgcaaatttcataaaacgaaattattcatcgacaatctcttcttctttgaatattcgcatat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30717722 agtcaacactttctgcaaattagatccaaaatcagtttcgcaaatttcataaaacgaaattattcatcgacaatctcttcttctttgaaaattcgcatat 30717821  T
Q  219 caacaacagcaccattagattaaataaaaactcgttcaactaactattactactactacagatcttccgaattcaattgaacagttgaatttaaaaatct 318  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717822 caacaacagcaacattagattaaataaaaactcgttcaactaactat---tactactacagatcttccgaattcaattgaacagttgaatttaaaaatct 30717918  T
Q  319 atatgataaataaatagataaaaaggaaaatcatagagaaattgtacgtaccttagaagcgtgatgaattttcttgaagccgtgaatacgaatgacctga 418  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30717919 atatgataaataaatagataaaaaggaaaatcagagagaaattgtacgtaccttaggagcgtgatgaattttcttgaagccgtgaatacgaatgacctga 30718018  T

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Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 30894602 - 30894468
Alignment:
Q  19 ctgcaacagcttcctccaccgtcagcacagcaaacgcggaaatgctctcggaaagcgtagatcgtggtagatccaccagatcgatcgcgtccacagcatc 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30894602 ctgcaacagcttcctccaccgtcagcacagcaaacacggaaatgctctcggaaagcgtagatcgtggtagatccaccagatcgatcgcgtccacagcatc 30894503  T
Q  119 agtcaacactttctgc-aaattagatccaaaatca 152  Q
    |||||||||||||||| ||||| ||||||||||||    
T  30894502 agtcaacactttctgcaaaattcgatccaaaatca 30894468  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 500 - 585
Target Start/End: Original strand, 30718099 - 30718184
Alignment:
Q  500 cctgattgagttgattcatggtgagatcaacggtgtggtgagagtgaagaagatgaatataatcttcgaggcagatcttctcgttc 585  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  30718099 cctgattgagttgattcatggtgagatcaacggtgtggcgagagtgaagaagatgaatgtaatcttcgaggcagatcttctcgttc 30718184  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 30894354 - 30894286
Alignment:
Q  353 agagaaattgtacgtaccttagaagcgtgatgaattttcttgaagccgtgaatacgaatgacctgagaa 421  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30894354 agagaaattgtacgtaccttaggagcgtgatgaattttcttgaagccgtgaatacgaatgacctgagaa 30894286  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 500 - 585
Target Start/End: Complemental strand, 30894210 - 30894125
Alignment:
Q  500 cctgattgagttgattcatggtgagatcaacggtgtggtgagagtgaagaagatgaatataatcttcgaggcagatcttctcgttc 585  Q
    ||||||||||||||||||| |||||||||  ||||| | ||||||||||||||||||| |||||||||||||||| ||| ||||||    
T  30894210 cctgattgagttgattcatagtgagatcattggtgttgcgagagtgaagaagatgaatgtaatcttcgaggcagagcttttcgttc 30894125  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 30894411 - 30894355
Alignment:
Q  261 actattactactactacagatcttccgaattcaattgaacagttgaatttaaaaatc 317  Q
    |||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  30894411 actactactactactacagatattctgaattcaattaaacagttgaatttaaaaatc 30894355  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 1619505 - 1619466
Alignment:
Q  158 gcaaatttcataaaacgaaattattcatcgacaatctctt 197  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  1619505 gcaaatttcataaaactaaattattcatcaacaatctctt 1619466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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