View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18679_high_11 (Length: 331)
Name: NF18679_high_11
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18679_high_11 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0024 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 103356 - 103041
Alignment:
| Q |
16 |
atcaccattaagtgttgtttaaatgaacaaaggcttgaaatttagttcgccaagaaatggttataatccatgtactaataatatgtttaataaaactatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
103356 |
atcaccattaagtgttgtttaaatgaacaaaggcttgaaatttagttcgccaagaaatggttataatccatgtactaataatatgtttaataaaactatt |
103257 |
T |
|
| Q |
116 |
ttccaaattaaggaaaatcttagcgtgttgttatttgggtttaagttctaatatcggcaattatcatattatacgtagattttcttgtaatgttcgttga |
215 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
103256 |
ttccaagttaaagaaaatcttagcgtgttgttatttgggtttaagttctaatttcggcaattatcatattatacgtagattttcttgtaatcttcgttga |
103157 |
T |
|
| Q |
216 |
ggttgatggttttcatttacctcgtacgactgtgtctcgccatatatttatatttattatatcaaaaccaataatgataatctgccccctaaaaaacgga |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
103156 |
ggttgatggttttcatttacctcatacgactgtgtctcgccatatatttatatttattatatcaaaaccaataatgataatcttccccataaaaaacgga |
103057 |
T |
|
| Q |
316 |
taattttaagagaaaa |
331 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
103056 |
taattttaagagaaaa |
103041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University