View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18679_high_4 (Length: 541)
Name: NF18679_high_4
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18679_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Original strand, 12010766 - 12011248
Alignment:
| Q |
13 |
aatatgtgtacgtacgtttatgcttgaatcaagtaagcttagatcataactcacttccttgcctttttagctaataatgaaataatcaaatctttgtcaa |
112 |
Q |
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| T |
12010766 |
aatatgtgtacattcgtttatgcttgaatcaagtaagcttagatcataactcacttccttgcctttttaggtaataatgaaaaaatcaaatct------- |
12010858 |
T |
|
| Q |
113 |
aaataacaggtattttccgcatacaagccatgttagaaatgcaattaagtggcaacaaggctccaccccggagctttcttgagtttctcttctttcatca |
212 |
Q |
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| T |
12010859 |
---------------tccgcatacaagccatgttagaaatgcaattaagtggtaacaaggctccaccccggagctttcttgagtttctcttctttcatca |
12010943 |
T |
|
| Q |
213 |
tcttcctcagtctcgaaacctcctgccattgtccagtctctgcgtacatattcgacaaagaaacgtgaactccatgattatgaggatccagagtaagaat |
312 |
Q |
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| T |
12010944 |
tcttcctcaatctcgaaacctcctgccattgtccagcctctgcgtacatattcgacaaagaaacatgaacaccatgattatgaggatccagagtaagaat |
12011043 |
T |
|
| Q |
313 |
ttgtttcacaactctttcagcaacctcagtgtttccgttattcttgctagctgccaacaaagctcccaaaataaccacgtcaggtttgcatggcatctct |
412 |
Q |
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| T |
12011044 |
ttgtttcacaaccctttcagcaacctcggtgtttccattattcttgctagctgccaataaagctcccaaaataaccacgtcaggtttccatggcatccct |
12011143 |
T |
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| Q |
413 |
tttatcatttcttctgcctctagcaacttaccccctctcccaagaagatcaaccatgcacccataatgctcaatcgttgtctcaattccatactcaacct |
512 |
Q |
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| T |
12011144 |
tttatcacttcctctgcctctagcaacttaccccctctcccaagaagatcaaccatgcacccataatgctcaatcgtcggctcaattccatgcacaacct |
12011243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 82 - 433
Target Start/End: Original strand, 38182858 - 38183212
Alignment:
| Q |
82 |
gctaataatgaaataatcaaatctttgtcaaaaataacaggtattttccgcatacaagccatgttagaaatgcaattaagtggcaacaaggctccacccc |
181 |
Q |
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||||| |||||||||||||| ||||| ||||||| || |||| | | || |||||||||||||||| ||||||||||||||||||| |||| || |
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| T |
38182858 |
gctaacaatgaaataatcaactcttttccaaaaatgccaagtatgtgtcatatgcaagccatgttagaaactcaattaagtggcaacaaggttccatcct |
38182957 |
T |
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| Q |
182 |
ggagctttcttgagtttctcttctttcatcatcttcctcagtctcgaaacctcctgccattgtccagtctctgcgtacatattcgacaaagaaacgtgaa |
281 |
Q |
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| T |
38182958 |
ggagctttcttgagtttctcttctttcatcatctttctcagtctcaaaactttgggccattgtctagcctatgcgtacatatttgacaaagcaacatgag |
38183057 |
T |
|
| Q |
282 |
ctccatgattatgaggatccagagtaagaatttgtttcacaactctttcagcaacctcagtgtttccgttattcttgctagctgccaacaaagctcccaa |
381 |
Q |
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| T |
38183058 |
ctccatgattatgtggttccagagcaagaatttctttcgctactctttcagccaactcagtgttgccattattcttgctagatgccagcaaagatcccaa |
38183157 |
T |
|
| Q |
382 |
aat---aaccacgtcaggtttgcatggcatctcttttatcatttcttctgcctct |
433 |
Q |
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||| ||||||| | ||||| ||||||||| ||||||| | ||| ||||||||| |
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| T |
38183158 |
aataacaaccacgcctggtttccatggcatcccttttataagttcctctgcctct |
38183212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 252 - 487
Target Start/End: Original strand, 21009317 - 21009553
Alignment:
| Q |
252 |
ctgcgtacatattcgacaaagaaacgtgaactccatgattatgaggatccagagtaagaatttgtttcacaactctttcagcaacctcagtgtttccgtt |
351 |
Q |
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||||||||||||| ||||||| || |||| ||| ||||||| ||| || ||||||||||| |||||| ||||||||| ||||||| | ||||| | |
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| T |
21009317 |
ctgcgtacatatttgacaaagcaatatgaattccgtgattatcagg-tctagagtaagaatgcatttcaccactctttcatcaacctcggcatttccatc |
21009415 |
T |
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| Q |
352 |
attcttgctagctgcca--acaaagctcccaaaataaccacgtcaggtttgcatggcatctcttttatcatttcttctgcctctagcaacttaccccctc |
449 |
Q |
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||||||||||||||| |||||||| ||||||||||||| |||||||| | |||||| ||||||| ||| || |||||||| |||||||| ||| |
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| T |
21009416 |
attcttgctagctgcttttacaaagcttccaaaataaccacatcaggtttccgcggcatcccttttatacattcctcagcctctagaaacttaccagctc |
21009515 |
T |
|
| Q |
450 |
tcccaagaagatcaaccatgcacccataatgctcaatc |
487 |
Q |
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| T |
21009516 |
tcccaagaagatcaaccatccattcataacgctcaatc |
21009553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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