View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18679_high_6 (Length: 503)
Name: NF18679_high_6
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18679_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 49272877 - 49272570
Alignment:
| Q |
9 |
acatcatcataatatgataaaagttacactaacactgcagagcttaacaaaaattgaacccaggagaaaaagaatatcatcagttttctccttagtcctt |
108 |
Q |
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| T |
49272877 |
acatcatcataatatgataaaagttacactaacactgcagagcttaacaaaaattgaacccaggagaaaaagaatatcatcagttttctccttagtcctt |
49272778 |
T |
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| Q |
109 |
atagtatctgagatttgatattctgctctaataaaattaagccataagcttcaaagatgtcaactaaacaagctgatagcaatataaagatagcaataaa |
208 |
Q |
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| T |
49272777 |
atagtatctgagatttgatattctgctctaataaaattaagccataagcttcaaagatgtcaactaaacaagctgatagcaatataaagatagcaataaa |
49272678 |
T |
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| Q |
209 |
tgttaaaaacttctcattttgtttaaagctgattttgacaaggtgtatgattagttgagtgggattgtctacattatgttacagtgaaaatgaagagtaa |
308 |
Q |
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| T |
49272677 |
tgttaaaaacttctcattttgtttaaagctgattttgacaaggtgtatgattagttgagtgggattgtctacattatgttacagtgaaaatgaagagtaa |
49272578 |
T |
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| Q |
309 |
acaggcta |
316 |
Q |
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|||||||| |
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| T |
49272577 |
acaggcta |
49272570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 316 - 467
Target Start/End: Complemental strand, 49272534 - 49272383
Alignment:
| Q |
316 |
aacgttaaacactgatgtatctgtttatgccacctaccacatatacatagactaatttgacaacaaattaaaatttgtttatagtaaaatgtttgagnnn |
415 |
Q |
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| T |
49272534 |
aacgttaaacactgatgtatctgtttatgccacctaccacatatacatagactaatttgacaacaaattaaaatttgtttatagtaaaatgtttgagttt |
49272435 |
T |
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| Q |
416 |
nnnnccaataattttatcttgtattgattgtttcttttcaatgattagcaga |
467 |
Q |
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| T |
49272434 |
ttttccaataattttatcttgtattgattgtttcttttcaatgattagcaga |
49272383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 49270688 - 49270603
Alignment:
| Q |
98 |
ccttagtccttatagtatctgagatttgatattctgctctaataaaattaagccataagcttcaaagatgtcaactaaacaagctg |
183 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||| | || |||| |||||||| | |||||| |||||||||||||| |
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| T |
49270688 |
ccttagtctttatagtatctgagatttgatatttctctctaatcacatcaagctataagctttagagatgttaactaaacaagctg |
49270603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 49270808 - 49270727
Alignment:
| Q |
9 |
acatcatcataatatgataaaagttacactaacactgcagag-cttaacaaaaattgaacccaggagaaaaagaatatcatc |
89 |
Q |
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|||||||||| |||||||||| | |||||||||||||||||| |||| |||||||||||| || ||||||| ||||||||| |
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| T |
49270808 |
acatcatcatgatatgataaaggatacactaacactgcagagccttaccaaaaattgaactgagaagaaaaaaaatatcatc |
49270727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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