View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18679_low_10 (Length: 355)
Name: NF18679_low_10
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18679_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 4321382 - 4321054
Alignment:
| Q |
10 |
aataatatcaagttcaaagaggtaattaagagttaagactttgttgtattaagattaggacaatacaacaaattttgaatgacaannnnnnnnnnnnnnn |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4321382 |
aatattatcaagttcaaagaggtaattaagagttaagactttgttgtattaagattaggacaatacaacaaattttgaatgacaattttttattttattt |
4321283 |
T |
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| Q |
110 |
nnnnatgcaggtatttgtgacaccaactcatttagctattgtcctggagtatgctgctggtggtgaactttttgacaggatagcctctgctggtcgactc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4321282 |
ttt-atgcaggtatttgtgacaccaactcatttagctattgtcctggagtatgctgctggtggtgaactttttgacaggatagcctctgctggtcgactc |
4321184 |
T |
|
| Q |
210 |
agtgaagacgaggttgtacattgtatataattatttattcatctacatgtactatatatcattgttgtcgaccgcatatcacagaaaataattgtttctt |
309 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4321183 |
agtgaagacgaggttgtacattgtatataaatatttattcatctacatatactatatatcattgttgtcgaccgcatatcacataaaataattgtttctt |
4321084 |
T |
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| Q |
310 |
taagatttgttatgttacaatattgatata |
339 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4321083 |
taagatttgttatgttacaatattgatata |
4321054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 41125825 - 41125922
Alignment:
| Q |
127 |
tgacaccaactcatttagctattgtcctggagtatgctgctggtggtgaactttttgacaggatagcctctgctggtcgactcagtgaagacgaggtt |
224 |
Q |
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||||||| ||||| |||| |||||| ||||||||||| ||||||||||||| || || |||||| ||| ||||||||| | |||||||| |||||| |
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| T |
41125825 |
tgacaccttctcatctagccattgtcttggagtatgcttctggtggtgaactcttcgagaggatatgctccgctggtcgatttagtgaagatgaggtt |
41125922 |
T |
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