View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18679_low_12 (Length: 329)

Name: NF18679_low_12
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18679_low_12
NF18679_low_12
[»] chr3 (4 HSPs)
chr3 (132-318)||(49977578-49977763)
chr3 (18-97)||(49977798-49977877)
chr3 (180-251)||(37085326-37085397)
chr3 (133-180)||(49976885-49976933)
[»] chr8 (2 HSPs)
chr8 (133-228)||(39217598-39217694)
chr8 (263-302)||(39217723-39217762)
[»] chr1 (1 HSPs)
chr1 (146-213)||(51720702-51720769)
[»] chr2 (1 HSPs)
chr2 (133-206)||(16497689-16497763)
[»] chr6 (1 HSPs)
chr6 (133-176)||(33771447-33771491)
[»] chr5 (1 HSPs)
chr5 (133-176)||(2168084-2168128)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 132 - 318
Target Start/End: Complemental strand, 49977763 - 49977578
Alignment:
Q  132 tgagaaatgctagatcacacccactaaaacactcttttaacacactcaaatgacaatcagccacatcacccacttattttaattccttgacaggttaccg 231  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49977763 tgagaaatgctagatcacatccactaaaacactcttttaacacactcaaatgacaattagccacatcacccacttattttaattccttgacaggttaccg 49977664  T
Q  232 gtaatacaagttgttaaatgttannnnnnnnattttactcgaacacatccttctcgtggaacttcaagctccttctcttctcttcat 318  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49977663 gtaatacaagttgttaaatgtta-tttttttattttactcgaacacatccttctcgttgaacttcaagctccttctcttctcttcat 49977578  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 49977877 - 49977798
Alignment:
Q  18 tttactagtatagcgactaaatcggtaagaaaagaataatttaaggacaaaattgactgtttatttattataaggttttg 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49977877 tttactagtatagcgactaaatcggtaagaaaagaataatttaaggacaaaattgactgtttatttattataaggttttg 49977798  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 37085326 - 37085397
Alignment:
Q  180 aatgacaatcagccacatcacccacttattttaattccttgacaggttaccggtaatacaagttgttaaatg 251  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| ||| ||||||| || | |||| ||||||    
T  37085326 aatgacaattaaccacatcacccgcttattttaattccttgactggtaaccggtactagaggttgctaaatg 37085397  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 49976885 - 49976933
Alignment:
Q  133 gagaaatgctaga-tcacacccactaaaacactcttttaacacactcaa 180  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  49976885 gagaaatgctagtgtcacacccactaacacactcttttaacacactcaa 49976933  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 39217598 - 39217694
Alignment:
Q  133 gagaaatgctaga-tcacacccactaaaacactcttttaacacactcaaatgacaatcagccacatcacccacttattttaattccttgacaggtta 228  Q
    ||||||||||||  ||||| ||||| | | ||| |||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||||    
T  39217598 gagaaatgctagggtcacatccactgacatactattttaacacattcaaatgataattagccacatcacccacttattttaattccttgacacgtta 39217694  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 39217723 - 39217762
Alignment:
Q  263 attttactcgaacacatccttctcgtggaacttcaagctc 302  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  39217723 attttactggaacacatccttctcgttgaacttcaagctc 39217762  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 51720769 - 51720702
Alignment:
Q  146 tcacacccactaaaacactcttttaacacactcaaatgacaatcagccacatcacccacttattttaa 213  Q
    ||||||||||||| || ||||||||||||| || ||| ||||  ||||| |||| |||||||||||||    
T  51720769 tcacacccactaacactctcttttaacacattccaatcacaacaagccatatcatccacttattttaa 51720702  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 16497763 - 16497689
Alignment:
Q  133 gagaaatgctaga-tcacacccactaaaacactcttttaacacactcaaatgacaatcagccacatcacccactt 206  Q
    ||||||||||||| |||||||  |||| ||||||||||||||||||| ||| | ||| | |||||||| ||||||    
T  16497763 gagaaatgctagagtcacaccatctaacacactcttttaacacactccaatcaaaattacccacatcatccactt 16497689  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 33771491 - 33771447
Alignment:
Q  133 gagaaatgctaga-tcacacccactaaaacactcttttaacacac 176  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||    
T  33771491 gagaaatgctagggtcacacccactaacacactcttttaacacac 33771447  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 2168128 - 2168084
Alignment:
Q  133 gagaaatgcta-gatcacacccactaaaacactcttttaacacac 176  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||    
T  2168128 gagaaatgctatgatcacaccctctaacacactcttttaacacac 2168084  T

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