View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18679_low_13 (Length: 301)
Name: NF18679_low_13
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18679_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 42834348 - 42834623
Alignment:
| Q |
13 |
aaaattattgaaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttgggaatggtg |
112 |
Q |
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| T |
42834348 |
aaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttgggaatggtg |
42834447 |
T |
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| Q |
113 |
agggtcaactagataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaagaatttaatttgaaagacgagga |
212 |
Q |
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| T |
42834448 |
agggtcaactagataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaagaatttaatttgaaagacgagga |
42834547 |
T |
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| Q |
213 |
gttgcaaaaacaaactgctaaattgagtactcatattccagagtatattccagagtatgtctccaacattacaaat |
288 |
Q |
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| T |
42834548 |
gttgcaaaaacaaactgctaaattgagtactcatattccagagtatattccagagtatgtctccaacattacaaat |
42834623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 42843082 - 42843178
Alignment:
| Q |
22 |
gaaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttgggaatggtgagggtc |
118 |
Q |
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| T |
42843082 |
gaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtc |
42843178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 42819167 - 42819285
Alignment:
| Q |
28 |
gaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttgggaatggtgagggtcaactagata |
127 |
Q |
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| T |
42819167 |
gaggaagagctaagagttaccaatttaaagcttcaactttcggaaaaagaggttatcaacttgaaggttcaagttgagaacagcaagggtcagtttgata |
42819266 |
T |
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| Q |
128 |
atgtgagcgaagaattgaa |
146 |
Q |
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| T |
42819267 |
atgtgtgtgaagaattgaa |
42819285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 42819413 - 42819461
Alignment:
| Q |
208 |
gaggagttgcaaaaacaaactgctaaattgagtactcatattccagagt |
256 |
Q |
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| T |
42819413 |
gaggagttgcaaaaacaaactgctgaattggatactcatatttcagagt |
42819461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 42843301 - 42843369
Alignment:
| Q |
124 |
gataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaagaa |
192 |
Q |
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| T |
42843301 |
gataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaa |
42843369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 12627732 - 12627892
Alignment:
| Q |
21 |
tgaaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttgggaatggtgagggtcaa |
120 |
Q |
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| T |
12627732 |
tgaaaaggaggaagagctaagaatttccaattttaaacttcaactttcaaaacaagaaactataaagttgaaggttgaaattgagaatagtgagggtgag |
12627831 |
T |
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| Q |
121 |
ctagataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagc |
181 |
Q |
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| T |
12627832 |
cttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaaactaaaagagc |
12627892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 12621861 - 12622017
Alignment:
| Q |
28 |
gaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttgggaatggtgagggtcaactagata |
127 |
Q |
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|||||||||||||| ||| | |||| || |||| ||||| ||| |||||| |||||||||||| || |||| || |||| | ||||||| || |||| |
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| T |
12621861 |
gaggaagagctaagagtttctaattttaaacttcagctttcggaacaagagattataaagttgaaagttcaagctgagaatagcaagggtcagcttgata |
12621960 |
T |
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| Q |
128 |
atgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttt |
184 |
Q |
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| T |
12621961 |
aggtgcgtgaagaattgaagctgaacaaggaagagctgcatgaacaaaaagagcttt |
12622017 |
T |
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