View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18679_low_15 (Length: 250)
Name: NF18679_low_15
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18679_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 5476222 - 5476391
Alignment:
| Q |
50 |
cactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaaagatccttccaattgtctttcttcatgggttggggaagattgc |
149 |
Q |
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| T |
5476222 |
cactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgc |
5476321 |
T |
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| Q |
150 |
tgtgattggaagggtatagaatgtgacaaccaaactggtcatgttctaaagtttgagctcaatacctatg |
219 |
Q |
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| T |
5476322 |
tgtaattggaagggtattgaatgtgacaaccaaactggtcatattctaaagtttgagctcaatacctatg |
5476391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 5484158 - 5484319
Alignment:
| Q |
50 |
cactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaaagatccttccaattgtctttcttcatgggttggggaagattgc |
149 |
Q |
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| T |
5484158 |
cactctttgcattaaggaagagagagtggcactccttaacatcaaaatagatctcaaagatccatccaattgcctttcttcatgagttggggaagattgc |
5484257 |
T |
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| Q |
150 |
tgtgattggaagggtatagaatgtgacaaccaaactggtcatgttctaaagtttgagctcaa |
211 |
Q |
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| T |
5484258 |
tgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaa |
5484319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 5489344 - 5489502
Alignment:
| Q |
51 |
actctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaaagatccttccaattgtctttcttcatgggttggggaagattgct |
150 |
Q |
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| T |
5489344 |
actctttgcattaaggaagagagagtggcactccttaaaatcaaaaaagatctcaaggatccttcaaattgcctttcttcatgggttggggaagattgtt |
5489443 |
T |
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| Q |
151 |
gtgattggaagggtatagaatgtgacaaccaaactggtcatgttctaaagtttgagctc |
209 |
Q |
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| T |
5489444 |
gtaattggaagggtatagaatgtgacaaccaaactggtcatgttcaaaagtttgagctc |
5489502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 5495125 - 5495285
Alignment:
| Q |
50 |
cactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaaagatccttccaattgtctttcttcatgggttggggaagattgc |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
5495125 |
cactctttgcattaaggaagagagagtggcactccttaaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatgggtcggggaagattgc |
5495224 |
T |
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| Q |
150 |
tgtgattggaagggtatagaatgtgacaaccaaactggtcatgttctaaagtttgagctca |
210 |
Q |
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||| |||||||||||||| ||||| |||||||||||||||||||| ||||| || |||||| |
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| T |
5495225 |
tgtaattggaagggtatacaatgtaacaaccaaactggtcatgttttaaagcttaagctca |
5495285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 5481309 - 5481447
Alignment:
| Q |
50 |
cactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaaagatccttccaattgtctttcttcatgggttggggaagattgc |
149 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||| |
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| T |
5481309 |
cactctttgcattaaggaagagagaatggcactccttaacgtcaaaaaagatctcaatgatccttacaattgcctttcttcatgggttgggaaagattgt |
5481408 |
T |
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| Q |
150 |
tgtgattggaagggtatagaatgtgacaaccaaactggt |
188 |
Q |
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||| |||| ||||||||||||||| | ||||||||| |
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| T |
5481409 |
tgtcgctggattggtatagaatgtgactatcaaactggt |
5481447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 5466556 - 5466684
Alignment:
| Q |
50 |
cactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaaagatccttccaattgtctttcttcatgggttggggaagattgc |
149 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| ||||| || ||||||||| | |||||| |
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| T |
5466556 |
cactctttgcattaaagaagagagggtggcactccttaacataaaaaaagatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgc |
5466655 |
T |
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| Q |
150 |
tgtgattggaagggtatagaatgtgacaa |
178 |
Q |
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||||| |||| |||||| |||||||||| |
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| T |
5466656 |
tgtgactggattggtatacaatgtgacaa |
5466684 |
T |
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