View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18679_low_18 (Length: 239)
Name: NF18679_low_18
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18679_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 37640596 - 37640420
Alignment:
| Q |
47 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagtagcaatgtctagaagcttccaagcga |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37640596 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagcagcaatgtctagaagcttccaagcga |
37640497 |
T |
|
| Q |
147 |
tgggagagtgatggttccagaacaaatgagagactaaacggtgagcgaggtcgacggaagggagagtgacggcggtg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37640496 |
tgggagagtgatggttccagaacaaatgagagactaaacggtgagcgaggtcgacggaagggagagtgacagcggtg |
37640420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 2156744 - 2156918
Alignment:
| Q |
47 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagtagcaatgtctagaagcttccaagcga |
146 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2156744 |
gtaacggaaatgtggaagaacatagtggagagaagagcgatgaggagtaacggaggaagaaggttgagtgaagtagcaatgtctagaagcttccaaacgg |
2156843 |
T |
|
| Q |
147 |
tgggagagtgatggttccagaacaaatgagagactaaacggtgagcgaggtcgacggaagggagagtgacggcgg |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2156844 |
tgggagagtgatggttccaaaacaaatgagagactaaacggagagcgaggtcgacggaagggagagtgacggcgg |
2156918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University