View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18679_low_2 (Length: 741)

Name: NF18679_low_2
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18679_low_2
NF18679_low_2
[»] chr8 (2 HSPs)
chr8 (149-337)||(26618357-26618544)
chr8 (149-207)||(41998706-41998764)
[»] chr7 (4 HSPs)
chr7 (150-337)||(8021377-8021563)
chr7 (153-200)||(25711995-25712042)
chr7 (149-195)||(40408528-40408574)
chr7 (149-207)||(38112307-38112365)
[»] chr1 (3 HSPs)
chr1 (150-337)||(23948077-23948263)
chr1 (149-337)||(5307095-5307282)
chr1 (149-337)||(50954175-50954362)
[»] chr3 (4 HSPs)
chr3 (150-337)||(54345114-54345300)
chr3 (149-328)||(54813881-54814059)
chr3 (153-328)||(46426945-46427119)
chr3 (88-137)||(37480433-37480481)
[»] chr2 (1 HSPs)
chr2 (149-331)||(40198018-40198202)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 6e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 149 - 337
Target Start/End: Original strand, 26618357 - 26618544
Alignment:
Q  149 cttaaacattgttgcttccaaccattcaacttactctgaattttgttgacaatgtgattaaatttgcctctcaaaactccttccagaagcaagattagcc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||| |||||  |||||||||||||    
T  26618357 cttaaacattgttgcttccaaccattcaacttactctgaattttgttaacaatatgattaaacttgcctctcaaa-ctctttccaagagcaagattagcc 26618455  T
Q  249 ccaagacacatgcccaaactattgacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattcttagagaa 337  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26618456 ccaagatacatgcccaagctattgacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattcttggagaa 26618544  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 41998764 - 41998706
Alignment:
Q  149 cttaaacattgttgcttccaaccattcaacttactctgaattttgttgacaatgtgatt 207  Q
    |||||||||||||||||||||||| |||||||  | |||||||| |||| ||| |||||    
T  41998764 cttaaacattgttgcttccaaccactcaacttgttttgaattttattgataatatgatt 41998706  T

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Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 150 - 337
Target Start/End: Original strand, 8021377 - 8021563
Alignment:
Q  150 ttaaacattgttgcttccaaccattcaacttactctgaattttgttgacaatgtgattaaatttgcctctcaaaactccttccagaagcaagattagccc 249  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||| |||||||||| ||||||||||||||    
T  8021377 ttaaacattgttgcttccaaccattcaacttgctctgaattttgttaacaatatgattaaacttgcctctcaaa-ctccttccaggagcaagattagccc 8021475  T
Q  250 caagacacatgcccaaactattgacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattcttagagaa 337  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8021476 caagatacatgcccaagctattaacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattcttggagaa 8021563  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 25712042 - 25711995
Alignment:
Q  153 aacattgttgcttccaaccattcaacttactctgaattttgttgacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25712042 aacattgttgcttccaaccattcaacttactctgaattttgttaacaa 25711995  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 40408528 - 40408574
Alignment:
Q  149 cttaaacattgttgcttccaaccattcaacttactctgaattttgtt 195  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||    
T  40408528 cttaaacattgttgcttccaaccactccacttactctaaattttgtt 40408574  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 38112307 - 38112365
Alignment:
Q  149 cttaaacattgttgcttccaaccattcaacttactctgaattttgttgacaatgtgatt 207  Q
    |||||||||||||||||||||||| | |||||  | ||||||||||||| ||| |||||    
T  38112307 cttaaacattgttgcttccaaccacttaacttgttttgaattttgttgataatatgatt 38112365  T

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Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 150 - 337
Target Start/End: Complemental strand, 23948263 - 23948077
Alignment:
Q  150 ttaaacattgttgcttccaaccattcaacttactctgaattttgttgacaatgtgattaaatttgcctctcaaaactccttccagaagcaagattagccc 249  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||| |||||||||| ||||||||||||||    
T  23948263 ttaaacattgttgcttccaaccattcaacttgctctgaattttgttaacaatatgattaaacttgcctctcaaa-ctccttccaggagcaagattagccc 23948165  T
Q  250 caagacacatgcccaaactattgacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattcttagagaa 337  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23948164 caagatacatgcccaatctattaacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattcttggagaa 23948077  T

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Target: chr1; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 149 - 337
Target Start/End: Complemental strand, 5307282 - 5307095
Alignment:
Q  149 cttaaacattgttgcttccaaccattcaacttactctgaattttgttgacaatgtgattaaatttgcctctcaaaactccttccagaagcaagattagcc 248  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||| |||||||||||| ||| |||||| |||||||||||||    
T  5307282 cttaaacattgttgcttccaaccattcaacttgctctgaattttgttaacaatattattaaacttgcctctcaaa-ctcattccaggagcaagattagcc 5307184  T
Q  249 ccaagacacatgcccaaactattgacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattcttagagaa 337  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  5307183 ccaagatacatgcccaagctattgacctgattaaaccctgtgtgatgtaaaatatcctcgtgaagttgggtatcaacattcttggagaa 5307095  T

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Target: chr1; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 149 - 337
Target Start/End: Original strand, 50954175 - 50954362
Alignment:
Q  149 cttaaacattgttgcttccaaccattcaacttactctgaattttgttgacaatgtgattaaatttgcctctcaaaactccttccagaagcaagattagcc 248  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||| |||| ||||||| ||||||| || ||||||||||||     
T  50954175 cttaaacattgttgcttcgaaccagtcaacttactctgaattttgttaacaatatgattaaacttgcttctcaaa-ctccttctaggagcaagattagca 50954273  T
Q  249 ccaagacacatgcccaaactattgacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattcttagagaa 337  Q
    |||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  50954274 ccaagatacatgccaaagctattgacctgattaaaccctgtgtgatgtaaaatatccccgcgaagttgggtatcaacattcttggagaa 50954362  T

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Target: chr3 (Bit Score: 140; Significance: 6e-73; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 150 - 337
Target Start/End: Complemental strand, 54345300 - 54345114
Alignment:
Q  150 ttaaacattgttgcttccaaccattcaacttactctgaattttgttgacaatgtgattaaatttgcctctcaaaactccttccagaagcaagattagccc 249  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||| |||||||||| ||||||||||||||    
T  54345300 ttaaacattgttgcttccaaccattcaacttgctctgaattttgttaacaatatgattaaacttgcctctcaaa-ctccttccaggagcaagattagccc 54345202  T
Q  250 caagacacatgcccaaactattgacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattcttagagaa 337  Q
    ||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54345201 caagatacatgcccaagctattaacctgattaaaccttgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattcttggagaa 54345114  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 149 - 328
Target Start/End: Original strand, 54813881 - 54814059
Alignment:
Q  149 cttaaacattgttgcttccaaccattcaacttactctgaattttgttgacaatgtgattaaatttgcctctcaaaactccttccagaagcaagattagcc 248  Q
    ||||||||||| || ||||| ||| |||||||||||||||||||||| ||||| |||||||| |  |||||   || |||| || | |||||| |||||     
T  54813881 cttaaacattgatgtttccagccactcaacttactctgaattttgttaacaatatgattaaaatgtcctct-ggaattcctccctgtagcaaggttagct 54813979  T
Q  249 ccaagacacatgcccaaactattgacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacatt 328  Q
    |||||  || | || |||||||| ||||||||||| || ||||| |||||||| ||  ||||||||||||||||||||||    
T  54813980 ccaaggtacctacctaaactatttacctgattaaaacccgtgtgttgtaaaatttcagcgcgaagttgggtatcaacatt 54814059  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 328
Target Start/End: Complemental strand, 46427119 - 46426945
Alignment:
Q  153 aacattgttgcttccaaccattcaacttactctgaattttgttgacaatgtgattaaatttgcctctcaaaactccttccagaagcaagattagccccaa 252  Q
    ||||||| || ||||| ||| |||||||||||||||||||||| ||||| |||||||| |  |||||   || |||| || | |||||| ||||| ||||    
T  46427119 aacattgatgtttccagccactcaacttactctgaattttgttaacaatatgattaaaatgtcctct-ggaattcctccctgtagcaaggttagctccaa 46427021  T
Q  253 gacacatgcccaaactattgacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacatt 328  Q
    |  || | || |||||||| ||||||| ||| || ||||| | |||||| ||  |||||||||||||| |||||||    
T  46427020 ggtacctacctaaactatttacctgatcaaaacccgtgtgttataaaatttcagcgcgaagttgggtaccaacatt 46426945  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 37480433 - 37480481
Alignment:
Q  88 tatgggcacttccgagagatgtttccgatcattgtctgttggtgttaaag 137  Q
    |||||||||||||||||||| ||| |||||||||||  ||||||||||||    
T  37480433 tatgggcacttccgagagat-tttacgatcattgtcctttggtgttaaag 37480481  T

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Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 149 - 331
Target Start/End: Original strand, 40198018 - 40198202
Alignment:
Q  149 cttaaacattgttgcttccaaccattcaacttactctgaattttgttgac---aatgtgattaaatttgcctctcaaaactccttccagaagcaagatta 245  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||   ||| |||||||| || ||||| ||| |||||||| || |||||||||    
T  40198018 cttaaacattgttgcttccaaccattcaacttactatgaattttgttaactacaatatgattaaactttcctcttaaa-ctccttcctgatgcaagatta 40198116  T
Q  246 gccccaagacacatgcccaaactattgacctgattaaaccctgtgtgatgtaaaatatcctcgcgaagttgggtatcaacattctt 331  Q
     |||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||  |||||| ||||||||||||||| ||||||    
T  40198117 accccaagatacatgcccaaactattaacctgattaaaccctatgtaatgtaaaacctcctcgtgaagttgggtatcaatattctt 40198202  T

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