View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18679_low_20 (Length: 237)

Name: NF18679_low_20
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18679_low_20
NF18679_low_20
[»] chr7 (44 HSPs)
chr7 (76-221)||(8019906-8020051)
chr7 (76-221)||(48618826-48618971)
chr7 (76-221)||(29213891-29214035)
chr7 (76-222)||(24473339-24473485)
chr7 (1-76)||(2446572-2446647)
chr7 (5-76)||(37025974-37026045)
chr7 (1-77)||(36875470-36875546)
chr7 (1-76)||(5050133-5050208)
chr7 (1-75)||(1378874-1378948)
chr7 (1-75)||(5056529-5056603)
chr7 (1-75)||(6021086-6021160)
chr7 (1-75)||(8142667-8142741)
chr7 (1-75)||(23612316-23612390)
chr7 (1-69)||(10831347-10831415)
chr7 (1-69)||(11025139-11025207)
chr7 (8-76)||(41455145-41455213)
chr7 (1-77)||(48353702-48353778)
chr7 (1-76)||(6795364-6795439)
chr7 (1-75)||(1948855-1948929)
chr7 (1-75)||(21642449-21642523)
chr7 (1-75)||(39432835-39432909)
chr7 (1-73)||(3924314-3924386)
chr7 (1-76)||(15914564-15914639)
chr7 (1-76)||(19089733-19089808)
chr7 (5-76)||(33850868-33850939)
chr7 (1-76)||(48347318-48347393)
chr7 (1-75)||(26601839-26601913)
chr7 (5-75)||(45433512-45433582)
chr7 (7-75)||(1941972-1942040)
chr7 (1-76)||(15949085-15949160)
chr7 (7-76)||(14298825-14298895)
chr7 (1-59)||(21901411-21901469)
chr7 (1-77)||(8193174-8193253)
chr7 (1-76)||(8185614-8185692)
chr7 (1-72)||(14287644-14287716)
chr7 (8-75)||(28442372-28442440)
chr7 (1-75)||(9643139-9643214)
chr7 (22-76)||(41542385-41542439)
chr7 (77-221)||(29760006-29760151)
chr7 (80-201)||(46045724-46045845)
chr7 (14-75)||(7413161-7413224)
chr7 (104-201)||(8035528-8035625)
chr7 (80-201)||(38110843-38110964)
chr7 (80-201)||(45033847-45033968)
[»] chr4 (26 HSPs)
chr4 (76-221)||(36894578-36894723)
chr4 (76-221)||(34389967-34390112)
chr4 (76-222)||(47597752-47597898)
chr4 (8-78)||(2947769-2947839)
chr4 (1-75)||(7780334-7780408)
chr4 (1-75)||(36755020-36755094)
chr4 (1-75)||(8103808-8103882)
chr4 (5-75)||(16405269-16405339)
chr4 (1-75)||(17456781-17456855)
chr4 (1-75)||(27590232-27590306)
chr4 (1-75)||(37368536-37368610)
chr4 (1-75)||(48914826-48914900)
chr4 (1-75)||(55462993-55463067)
chr4 (1-78)||(30238184-30238261)
chr4 (3-75)||(16838582-16838654)
chr4 (5-75)||(13004012-13004082)
chr4 (8-77)||(41372911-41372980)
chr4 (5-75)||(30211753-30211822)
chr4 (99-221)||(43270975-43271097)
chr4 (1-75)||(13594032-13594107)
chr4 (1-75)||(5660773-5660849)
chr4 (80-201)||(1369251-1369372)
chr4 (80-201)||(28945537-28945658)
chr4 (137-204)||(36859034-36859101)
chr4 (174-206)||(28561506-28561538)
chr4 (16-75)||(33110068-33110128)
[»] chr3 (34 HSPs)
chr3 (76-221)||(54346627-54346772)
chr3 (76-221)||(27156329-27156474)
chr3 (76-222)||(54812410-54812556)
chr3 (76-222)||(42794377-42794523)
chr3 (76-222)||(46428447-46428593)
chr3 (1-76)||(43931508-43931583)
chr3 (8-78)||(3577166-3577236)
chr3 (1-81)||(6036187-6036267)
chr3 (1-76)||(13014912-13014987)
chr3 (1-75)||(18341513-18341587)
chr3 (1-75)||(25893157-25893231)
chr3 (1-75)||(32746297-32746371)
chr3 (8-77)||(4590719-4590788)
chr3 (8-76)||(9570778-9570846)
chr3 (8-76)||(9577280-9577348)
chr3 (7-75)||(23068391-23068459)
chr3 (5-76)||(10941529-10941600)
chr3 (1-78)||(41354291-41354368)
chr3 (1-77)||(24178999-24179074)
chr3 (1-72)||(43994997-43995070)
chr3 (8-76)||(18866704-18866772)
chr3 (8-75)||(4311714-4311781)
chr3 (1-75)||(27502189-27502264)
chr3 (1-76)||(41353787-41353862)
chr3 (76-222)||(43912414-43912560)
chr3 (8-75)||(4674854-4674921)
chr3 (138-218)||(34265164-34265244)
chr3 (9-75)||(17735310-17735377)
chr3 (9-75)||(19036579-19036646)
chr3 (1-76)||(20651353-20651430)
chr3 (8-77)||(24899301-24899371)
chr3 (8-77)||(24905767-24905837)
chr3 (1-73)||(2785635-2785709)
chr3 (80-202)||(43328870-43328992)
[»] chr2 (38 HSPs)
chr2 (76-221)||(13186780-13186925)
chr2 (76-221)||(7305242-7305389)
chr2 (76-221)||(40190581-40190726)
chr2 (1-76)||(12950722-12950797)
chr2 (1-77)||(13902178-13902254)
chr2 (143-221)||(37307445-37307523)
chr2 (5-73)||(41455535-41455603)
chr2 (1-76)||(34835033-34835108)
chr2 (1-76)||(34841477-34841552)
chr2 (1-75)||(2157539-2157613)
chr2 (1-75)||(15852476-15852550)
chr2 (1-75)||(16817550-16817624)
chr2 (1-75)||(16856707-16856781)
chr2 (1-75)||(29484853-29484927)
chr2 (1-75)||(36782406-36782480)
chr2 (1-75)||(42931593-42931667)
chr2 (1-75)||(43267785-43267859)
chr2 (1-75)||(45011909-45011983)
chr2 (1-76)||(36838069-36838144)
chr2 (1-75)||(21332215-21332289)
chr2 (7-76)||(2163954-2164023)
chr2 (7-75)||(2021675-2021743)
chr2 (107-219)||(26381464-26381576)
chr2 (8-75)||(44611169-44611236)
chr2 (1-75)||(21342103-21342177)
chr2 (1-75)||(21068179-21068252)
chr2 (8-76)||(43669692-43669760)
chr2 (8-75)||(33033678-33033745)
chr2 (5-76)||(17784672-17784745)
chr2 (6-73)||(13162737-13162805)
chr2 (80-201)||(11995904-11996025)
chr2 (80-201)||(42865734-42865855)
chr2 (6-76)||(37439717-37439788)
chr2 (80-201)||(24126584-24126705)
chr2 (5-76)||(11910185-11910259)
chr2 (6-40)||(24853209-24853243)
chr2 (137-198)||(3733098-3733159)
chr2 (1-38)||(45700871-45700908)
[»] chr1 (39 HSPs)
chr1 (76-221)||(5308534-5308679)
chr1 (76-221)||(23949590-23949735)
chr1 (76-221)||(23085072-23085217)
chr1 (76-221)||(50952729-50952875)
chr1 (76-222)||(22065363-22065509)
chr1 (1-75)||(42091823-42091897)
chr1 (1-75)||(4599455-4599529)
chr1 (5-73)||(38672993-38673061)
chr1 (4-75)||(11913485-11913556)
chr1 (1-76)||(26621395-26621470)
chr1 (1-72)||(28413895-28413966)
chr1 (1-76)||(39053559-39053634)
chr1 (1-75)||(6238582-6238656)
chr1 (1-75)||(27240352-27240426)
chr1 (5-75)||(31072245-31072315)
chr1 (1-75)||(32797663-32797737)
chr1 (1-75)||(39059931-39060005)
chr1 (1-75)||(43686554-43686628)
chr1 (1-75)||(45015708-45015782)
chr1 (1-76)||(2825040-2825115)
chr1 (5-75)||(1116209-1116278)
chr1 (1-75)||(1174532-1174606)
chr1 (1-72)||(5445184-5445255)
chr1 (1-76)||(23764653-23764728)
chr1 (5-76)||(39805983-39806054)
chr1 (5-76)||(44241283-44241354)
chr1 (1-75)||(29001658-29001732)
chr1 (6-75)||(9869032-9869101)
chr1 (1-65)||(41299410-41299474)
chr1 (1-65)||(41305736-41305800)
chr1 (20-75)||(27041109-27041164)
chr1 (1-76)||(41297442-41297517)
chr1 (1-76)||(44916256-44916331)
chr1 (80-201)||(6293833-6293954)
chr1 (76-192)||(2601107-2601220)
chr1 (80-204)||(16854763-16854887)
chr1 (16-78)||(15162154-15162217)
chr1 (1-48)||(5357974-5358023)
chr1 (80-201)||(28705808-28705929)
[»] chr8 (24 HSPs)
chr8 (76-221)||(26616886-26617031)
chr8 (76-221)||(1635890-1636035)
chr8 (76-221)||(456522-456662)
chr8 (99-222)||(44145596-44145719)
chr8 (1-76)||(8013541-8013616)
chr8 (1-76)||(41242337-41242412)
chr8 (1-75)||(6464797-6464871)
chr8 (1-75)||(7311276-7311350)
chr8 (1-75)||(15012315-15012389)
chr8 (1-75)||(16710890-16710964)
chr8 (1-75)||(36005703-36005777)
chr8 (1-78)||(11358415-11358492)
chr8 (7-75)||(36075894-36075962)
chr8 (8-75)||(7934155-7934222)
chr8 (1-76)||(12768670-12768745)
chr8 (1-75)||(36022021-36022095)
chr8 (1-75)||(1238140-1238214)
chr8 (1-75)||(36425952-36426026)
chr8 (6-76)||(31017325-31017395)
chr8 (76-198)||(38560780-38560902)
chr8 (104-201)||(33373015-33373112)
chr8 (80-201)||(45093258-45093379)
chr8 (1-36)||(14393700-14393735)
chr8 (107-165)||(20670285-20670343)
[»] chr5 (30 HSPs)
chr5 (76-221)||(18259301-18259446)
chr5 (76-221)||(34080900-34081045)
chr5 (1-76)||(33794018-33794093)
chr5 (1-77)||(34359300-34359376)
chr5 (1-76)||(34357509-34357584)
chr5 (124-222)||(4560524-4560622)
chr5 (1-75)||(25894871-25894945)
chr5 (1-75)||(30041465-30041539)
chr5 (1-75)||(42150745-42150819)
chr5 (1-76)||(2966253-2966328)
chr5 (1-75)||(2156339-2156413)
chr5 (1-75)||(2957785-2957859)
chr5 (7-76)||(5876144-5876213)
chr5 (5-65)||(2438738-2438798)
chr5 (76-192)||(18933974-18934090)
chr5 (8-76)||(40821562-40821630)
chr5 (1-76)||(22359890-22359965)
chr5 (1-75)||(29414890-29414964)
chr5 (8-65)||(9843286-9843343)
chr5 (1-64)||(29980397-29980460)
chr5 (1-75)||(40958838-40958912)
chr5 (78-222)||(18883271-18883416)
chr5 (5-65)||(4973500-4973560)
chr5 (8-76)||(22313756-22313824)
chr5 (80-201)||(14024752-14024873)
chr5 (80-201)||(32386305-32386426)
chr5 (13-77)||(34738120-34738186)
chr5 (13-76)||(3663995-3664059)
chr5 (149-221)||(32216680-32216752)
chr5 (76-108)||(22540215-22540247)
[»] chr6 (28 HSPs)
chr6 (76-222)||(1223124-1223270)
chr6 (5-76)||(30117493-30117564)
chr6 (1-76)||(34711778-34711853)
chr6 (1-75)||(1428644-1428718)
chr6 (1-75)||(11058371-11058445)
chr6 (1-76)||(4020457-4020532)
chr6 (1-76)||(7062705-7062780)
chr6 (1-76)||(7069921-7069996)
chr6 (5-76)||(29906816-29906887)
chr6 (1-76)||(32328714-32328789)
chr6 (1-76)||(34648725-34648800)
chr6 (1-76)||(34655176-34655251)
chr6 (1-75)||(4026883-4026957)
chr6 (9-75)||(4738553-4738619)
chr6 (2-76)||(21262797-21262871)
chr6 (1-76)||(9864982-9865057)
chr6 (1-76)||(13672038-13672113)
chr6 (8-76)||(7825913-7825981)
chr6 (8-76)||(10800803-10800871)
chr6 (8-75)||(4186612-4186679)
chr6 (6-76)||(27670020-27670090)
chr6 (8-75)||(24908347-24908414)
chr6 (1-79)||(1167716-1167795)
chr6 (21-76)||(1461189-1461244)
chr6 (8-76)||(14118790-14118858)
chr6 (1-64)||(31547833-31547896)
chr6 (6-40)||(11015215-11015249)
chr6 (16-76)||(9517818-9517879)
[»] scaffold0744 (1 HSPs)
scaffold0744 (1-76)||(6911-6986)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-75)||(5226-5300)
[»] scaffold0053 (2 HSPs)
scaffold0053 (5-77)||(49616-49688)
scaffold0053 (6-76)||(55598-55668)
[»] scaffold0060 (1 HSPs)
scaffold0060 (5-75)||(15098-15168)
[»] scaffold0045 (2 HSPs)
scaffold0045 (8-76)||(9355-9423)
scaffold0045 (8-76)||(2973-3041)
[»] scaffold0173 (1 HSPs)
scaffold0173 (5-75)||(24471-24541)
[»] scaffold0343 (1 HSPs)
scaffold0343 (13-73)||(2574-2634)
[»] scaffold0936 (1 HSPs)
scaffold0936 (1-76)||(3484-3559)
[»] scaffold0513 (1 HSPs)
scaffold0513 (1-76)||(11876-11951)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-76)||(99840-99915)
[»] scaffold0510 (2 HSPs)
scaffold0510 (1-65)||(2782-2846)
scaffold0510 (1-76)||(9103-9178)
[»] scaffold0859 (1 HSPs)
scaffold0859 (8-75)||(4718-4786)
[»] scaffold0003 (1 HSPs)
scaffold0003 (104-221)||(355796-355912)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 8019906 - 8020051
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  8019906 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatc 8020005  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8020006 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 8020051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 48618971 - 48618826
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48618971 actttccactataagataagagtaatgttccctccaagccatgtccaaatccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatc 48618872  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  48618871 ttcttagtgtagcctttgatccatctaccatctgaatcacaaaaaa 48618826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 29213891 - 29214035
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||    
T  29213891 actttccactacaagataagagtcatgttccctccaagccatgtccaaacccaaatatagcccc-acatctcagcatgcaaggcatcacaagctctaatc 29213989  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  29213990 ttcttagtgtagcatttgacccatctaccgtctaaatcacgaaaaa 29214035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 24473485 - 24473339
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||| |||||||||    |||| || ||||||||||| || | | ||||||| | |||||||||||||||||||||||||||||| |||||||||    
T  24473485 actttccacaataagatgatcaaaatgctcactccaagccatctctatatccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatc 24473386  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaat 222  Q
    ||||||||||| ||||| |||||| |||| |||| ||||||||||||    
T  24473385 ttcttagtgtaacctttaatccatttaccatctgcatcacgaaaaat 24473339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2446647 - 2446572
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2446647 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 2446572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 37026045 - 37025974
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37026045 gtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 37025974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36875546 - 36875470
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36875546 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaac 36875470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5050133 - 5050208
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5050133 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 5050208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1378948 - 1378874
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1378948 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 1378874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5056529 - 5056603
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5056529 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgaaaaaatactacatca 5056603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6021086 - 6021160
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6021086 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 6021160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8142667 - 8142741
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8142667 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 8142741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23612390 - 23612316
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23612390 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 23612316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10831347 - 10831415
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatact 69  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10831347 gtccgtgatatcgcactagtccttgaggagacgatataaatacttactattgtttgatgcaaaaatact 10831415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11025139 - 11025207
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatact 69  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11025139 gtccgtgatatcgcactagtccttgaggagacgatataaatacttactattgtttgatgcaaaaatact 11025207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 41455145 - 41455213
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41455145 atattgcatcagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 41455213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 48353702 - 48353778
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  48353702 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgaaaaaatactacatcaac 48353778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6795439 - 6795364
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  6795439 gtccgcgatatcgcactagtccctgaggagatgatataaatatttactattgtttgatgcaaaaatactacatcaa 6795364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 1948855 - 1948929
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1948855 gtccgcgatatcgcactagtctctgaggagacgatacaaatacttactattgtttgatgcaaaaatactacatca 1948929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21642523 - 21642449
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21642523 gtccgcgatatcgcacttgtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 21642449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 39432909 - 39432835
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39432909 gtccgtaatatcgcactagtccttgaggagacgatataaatatttactattgtttgatgcaaaaatactacatca 39432835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3924314 - 3924386
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacat 73  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3924314 gtccgcgatatcgcactaatccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacat 3924386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15914639 - 15914564
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  15914639 gtccgcgatatcgcactagtccctgaggagacgatacaaatacttacatttgtttgatgcaaaaatactacatcaa 15914564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19089808 - 19089733
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||    
T  19089808 gtccgcgatatcgcactagtccctgaggagacgatacaaatacttactatagtttgatgcaaaagtactacatcaa 19089733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 33850868 - 33850939
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  33850868 gtgatatcgcactagtccatgaggagacgatataaatacttaccattttttgatgcaaaaatactacatcaa 33850939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 48347318 - 48347393
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  48347318 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgaaaaaatattacatcaa 48347393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26601913 - 26601839
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||    
T  26601913 gtccgcgatatcgcactagtccctgaggagacgatacaaatacttacaattgtttgatgtaaaaatactacatca 26601839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 45433582 - 45433512
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45433582 gtgatatcgcactagaccctaaggagacgatataaatactcactattgtttgatgcaaaaatactacatca 45433512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 1942040 - 1941972
Alignment:
Q  7 gatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| |||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  1942040 gatatcgcactagtccttgaggagacgatacaaatacttacaattgtttgatgcaaaaatactacatca 1941972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15949160 - 15949085
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| |||||  ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  15949160 gtccgcgatatcacactagtccctgaggagacgatacaaatacttacaattatttgatgcaaaaatactacatcaa 15949085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 14298895 - 14298825
Alignment:
Q  7 gatattgcactagtccctgaggagacgatataaatacttactatt-gtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  14298895 gatatcgcactagtccctgaggagacgatataaatacttacaattattttgatgcaaaaatactacatcaa 14298825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21901411 - 21901469
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatg 59  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21901411 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatg 21901469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8193174 - 8193253
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatg---caaaaatactacatcaac 77  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||    |||||||||||||||||    
T  8193174 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgaaaaaaaaatactacatcaac 8193253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 8185614 - 8185692
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaa---atactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||   ||||||||||||    
T  8185614 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgaaaaaaaaatactacatcaa 8185692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14287716 - 14287644
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactatt-gtttgatgcaaaaatactaca 72  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  14287716 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattattttgatgcaaaaatactaca 14287644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 28442440 - 28442372
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaa-tacttactattgtttgatgcaaaaatactacatca 75  Q
    |||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  28442440 atatcgcaccagtccctgaggagacgatataaaatacttacaattgtttgatgcaaaaatactacatca 28442372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 9643139 - 9643214
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactatt-gtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||| |||  |||||||||||||||||||||||    
T  9643139 gtccgcgatatcgcactagtccctgaggagacgatacaaatacttacaattattttgatgcaaaaatactacatca 9643214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 41542439 - 41542385
Alignment:
Q  22 cctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41542439 cctgtggagacgatataaatacttactattatttgatgcaaaaatactacatcaa 41542385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 29760006 - 29760151
Alignment:
Q  77 ctttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaata-tagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||| |||||  ||||||||||||||||||| |||||  |||| ||  | |||||| |||||| ||||||| ||||||||  ||||||||    
T  29760006 ctttccactataaggtgagaaaaatgttccctccaagccatttccaaggccaagtacaatcccccatatctcaacatgtaaagcatcacaaactccaatc 29760105  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    |||||||  || || ||||||||| | |||| || ||||| |||||    
T  29760106 ttcttagcataaccattgatccattttccgtttgtatcacaaaaaa 29760151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 46045845 - 46045724
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  46045845 tccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 46045746  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  46045745 tgaagtagcctttgatccatct 46045724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 7413161 - 7413224
Alignment:
Q  14 cactagtccctgaggagacgatata--aatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||||||||||||||||||| |  |||||||||| ||| |||||  |||||||||||||||    
T  7413161 cactagtccctgaggagacgatacaacaatacttacttttgattgatagaaaaatactacatca 7413224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 8035625 - 8035528
Alignment:
Q  104 tccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatccatct 201  Q
    ||||||||  ||||||||||||| |  || |  |||||||| |||||||| || ||||||||   ||||||||||||   ||||||||||||||||||    
T  8035625 tccctccacaccatgtccaaacctaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttcttgaagtagcctttgatccatct 8035528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 38110843 - 38110964
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| ||||||| |||||| |  || |  ||||| || |||||||| || ||||||||   |||||||||||    
T  38110843 tccactataagatgagtggtattctccctccacgccatgttcaaacctaggtacatgccccatatttcagcatgaaaagcatcacacattccaatcttct 38110942  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  38110943 tgaagtagcctttgatccatct 38110964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 45033847 - 45033968
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    ||||||||||||| || |  || ||| ||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   | |||||||||    
T  45033847 tccactataagataagtggtattttctctccatgccatgtccaaacctaggtacatgccccacatttcagcatgaaaagcatcacacatttcaatcttct 45033946  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  45033947 tgaagtagcctttgatccatct 45033968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 36894578 - 36894723
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36894578 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatc 36894677  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  36894678 ttcttagtgtagcctttgatccatctaccgtctgaatcatgaaaaa 36894723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 34389967 - 34390112
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34389967 actttccactataagatgagagtaatgttccctccaagccatgtccaaactcaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatc 34390066  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  34390067 ttcttagtatagcctttgatccatctaccgtttgaatcacgaaaaa 34390112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 47597752 - 47597898
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||| |||||||||    |||| ||||| |||||||| |  | ||||||||| | |||||||||||||||||||||||||||||| |||||||||    
T  47597752 actttccacaataagatgatcaaaatgctcccttcaagccatctttatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatc 47597851  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaat 222  Q
    ||||||||||||||||| |||||| |||| |||| ||||||||||||    
T  47597852 ttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaat 47597898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 2947839 - 2947769
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaact 78  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2947839 atatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaact 2947769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7780408 - 7780334
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7780408 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 7780334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 36755020 - 36755094
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755020 gtccgtgatatcgcactagtccatgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 36755094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8103882 - 8103808
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8103882 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 8103808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 16405339 - 16405269
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16405339 gtgatatcgcactagtccctaaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 16405269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17456855 - 17456781
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17456855 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 17456781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 27590306 - 27590232
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27590306 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 27590232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37368536 - 37368610
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37368536 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 37368610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 48914900 - 48914826
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48914900 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 48914826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 55462993 - 55463067
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55462993 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 55463067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 30238261 - 30238184
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaact 78  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30238261 gtccgcgatatcgcactagtccttgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaact 30238184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 16838582 - 16838654
Alignment:
Q  3 ccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16838582 ccgtgatatcgcactagtccttgaggagaagatataaatacttactattgtttgatgcaaaaatactacatca 16838654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 13004012 - 13004082
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  13004012 gtgatatcgcactagtccctgaggagacgatataaatacttaatattgtttgatgctaaaatactacatca 13004082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 41372980 - 41372911
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  41372980 atatcgcactagtccctgaggagacgatataaatacttgcaattgtttgatgcaaaaatactacatcaac 41372911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 30211753 - 30211822
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  30211753 gtgatatcgcactagtccctgagaagacgatataaatacttactatt-tttgatgcaaaaatactacatca 30211822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 43270975 - 43271097
Alignment:
Q  99 aatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatcca 198  Q
    |||| ||||||||||||||||| | | | ||||| | |||  ||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||| |    
T  43270975 aatgctccctccaagccatgtctatatctaaatacaacccatacatctcagcatgtaaggcatcacaagctcacatcttcttagtgtagcctttaatcaa 43271074  T
Q  199 tctaccgtctgaatcacgaaaaa 221  Q
    | |||| ||||||| ||||||||    
T  43271075 tttaccatctgaattacgaaaaa 43271097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13594107 - 13594032
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactatt-gtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||| |||  |||||||||||||||||||||||    
T  13594107 gtccgcgatatcgcactagtccctgaggagacgatacaaatacttacaattattttgatgcaaaaatactacatca 13594032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5660773 - 5660849
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacg--atataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||||||| |||||||||||||||||||||  ||||||||| ||||| |||||||| | |||||||||||||||    
T  5660773 gtccgtgatatcgcactagtccctgaggagacgatatataaatagttacttttgtttgaaggaaaaatactacatca 5660849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 1369372 - 1369251
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  1369372 tccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 1369273  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  1369272 tgaagtagcctttgatccatct 1369251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 28945537 - 28945658
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  28945537 tccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 28945636  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  28945637 tgaagtagcctttgatccatct 28945658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 36859034 - 36859101
Alignment:
Q  137 ccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatccatctacc 204  Q
    |||||||| |||||||| || ||||||||   ||||||||||||   |||||||||||||||||||||    
T  36859034 ccccacatttcagcatgaaaagcatcacacattccaatcttcttgaagtagcctttgatccatctacc 36859101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 28561506 - 28561538
Alignment:
Q  174 tcttcttagtgtagcctttgatccatctaccgt 206  Q
    ||||||||||||||||||| |||||||||||||    
T  28561506 tcttcttagtgtagcctttaatccatctaccgt 28561538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 33110128 - 33110068
Alignment:
Q  16 ctagtccctgaggagacgatata-aatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||| || |||||||||||| |||||||||| ||| |||||  |||||||||||||||    
T  33110128 ctagtccatgtggagacgatatacaatacttacttttgattgatagaaaaatactacatca 33110068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 54346772 - 54346627
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  54346772 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatc 54346673  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  54346672 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 54346627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 27156329 - 27156474
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||    
T  27156329 actttccactataagatgagagtaatgttccctccaagctatgtccaaacccaaatatagtcctcacatctcagcatgtaaggcatcacaagctctaatc 27156428  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  27156429 ttcttagtgtagcctttgatccatctaccgtctgaatcatgaaaaa 27156474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 54812410 - 54812556
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||| |||||||||    |||| |||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||| ||| |||||    
T  54812410 actttccacaataagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagcttcaatc 54812509  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaat 222  Q
    ||||||||||||||||| |||||| |||| |||| ||||||||||||    
T  54812510 ttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaat 54812556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 42794523 - 42794377
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||| |||||||||    |||| |||||||||||||| || | ||||||||| | |||||||||||||||||||||| ||||||| |||||||||    
T  42794523 actttccacaataagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaagacatcacaagctccaatc 42794424  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaat 222  Q
    ||||||||||||||||| |||||| |||| |||| ||| ||||||||    
T  42794423 ttcttagtgtagcctttaatccatttaccatctgcatcgcgaaaaat 42794377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 46428593 - 46428447
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||| |||||||||    |||| ||||| |||||||| || | ||||||||| | ||||||||||||| |||||||||||||||| |||||||||    
T  46428593 actttccacaataagatgatcaaaatgctccctgcaagccatctctatacccaaatacaacccccacatctcaacatgtaaggcatcacaagctccaatc 46428494  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaat 222  Q
    ||||||||||||||||| |||||| |||| |||| ||||||||||||    
T  46428493 ttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaat 46428447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43931583 - 43931508
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43931583 gtccgtgatatcgcactagtccctaaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 43931508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 3577166 - 3577236
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaact 78  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3577166 atatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaact 3577236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 6036267 - 6036187
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaactttc 81  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  6036267 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattatttgatgcaaaaatactacatcaactttc 6036187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13014987 - 13014912
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13014987 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 13014912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 18341513 - 18341587
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18341513 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 18341587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25893231 - 25893157
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25893231 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 25893157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32746371 - 32746297
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32746371 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 32746297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 4590788 - 4590719
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4590788 atatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaac 4590719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 9570778 - 9570846
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9570778 atatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 9570846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 9577280 - 9577348
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9577280 atatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 9577348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 23068459 - 23068391
Alignment:
Q  7 gatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23068459 gatatcgcactagtccctgaggagacgatacaaatacttactattgtttgatgcaaaaatactacatca 23068391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 10941529 - 10941600
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10941529 gtgatatcgcactagtccttgaggagacgatataaatacttactattggttgatgcaaaaatactacatcaa 10941600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 41354291 - 41354368
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaact 78  Q
    |||| |||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  41354291 gtccatgatatcgcactagtccttgaggagacgatataaatacttgcaattgtttgatgcaaaaatactacatcaact 41354368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 24179074 - 24178999
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24179074 gtccgcgatatcgcactagtcc-tgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaac 24178999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 43995070 - 43994997
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagac--gatataaatacttactattgtttgatgcaaaaatactaca 72  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  43995070 gtccgtgatatcgcactagtccctgaggagacacgatataaatacttacttttgtttgatgcaaaaatactaca 43994997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 18866772 - 18866704
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18866772 atatcgcaccagtccctgtggagacgatttaaatacttactattgtttgatgcaaaaatactacatcaa 18866704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 4311714 - 4311781
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||    
T  4311714 atatcgcactagtccctgaggagacgatacaaatacttacaattgtttgttgcaaaaatactacatca 4311781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27502189 - 27502264
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatg-caaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||    
T  27502189 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgaaaaaaatactacatca 27502264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41353862 - 41353787
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| |||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  41353862 gtccgcgatatcgcactagtccctaagaagacgatacaaatacttacaattgtttgatgcaaaaatactacatcaa 41353787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 43912414 - 43912560
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||| ||||||||||||    |||| |||||||||||||| || | ||||||||| | ||| ||||||||| ||||||||| |||||| |||| ||||    
T  43912414 actttcaactataagatgatcaaaatgctccctccaagccatctctatacccaaatacaaccctcacatctcatcatgtaaggtatcacaagctcaaatc 43912513  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaat 222  Q
    ||||||  ||||||||| |||||| || | |||  ||||||||||||    
T  43912514 ttcttaacgtagcctttaatccatttatcatctacatcacgaaaaat 43912560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 4674921 - 4674854
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||| |||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  4674921 atatcgcaccagtccctgtggagacgatacaaatacttacaattgtttgatgcaaaaatactacatca 4674854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 34265244 - 34265164
Alignment:
Q  138 cccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaa 218  Q
    |||||||||||||||||||| ||||||| ||| ||||||| |||||||| | ||| |||||| |||| |||||||||||||    
T  34265244 cccacatctcagcatgtaagacatcacaagcttcaatctttttagtgtaacatttaatccatttaccatctgaatcacgaa 34265164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 17735377 - 17735310
Alignment:
Q  9 tattgcactagtccctgaggagacga-tataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||||||||||||||||||||||||| || ||||||||||||||| |||||  |||||||||||||||    
T  17735377 tattgcactagtccctgaggagacgattacaaatacttactattgattgatagaaaaatactacatca 17735310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 19036646 - 19036579
Alignment:
Q  9 tattgcactagtccctgaggagacga-tataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||||||||||||||||||||||||| || ||||||||||||||| |||||  |||||||||||||||    
T  19036646 tattgcactagtccctgaggagacgattacaaatacttactattgattgatagaaaaatactacatca 19036579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20651353 - 20651430
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatat--aaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| ||||||  ||||||||||| ||||||||||||  ||||||||||| || ||||||| ||||||||||||||||    
T  20651353 gtccatgatatcacactagtccctaaggagacgatatataaatacttacttttatttgatgaaaaaatactacatcaa 20651430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 24899371 - 24899301
Alignment:
Q  8 atattgcactagtccctgaggagacgatata-aatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||| |||||  |||||||||||||||||    
T  24899371 atatcgcactagtccctgtggagacgatatacaatacttacttttgattgatagaaaaatactacatcaac 24899301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 24905837 - 24905767
Alignment:
Q  8 atattgcactagtccctgaggagacgatata-aatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||| |||||  |||||||||||||||||    
T  24905837 atatcgcactagtccctgtggagacgatatacaatacttacttttgattgatagaaaaatactacatcaac 24905767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2785709 - 2785635
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgat--ataaatacttactattgtttgatgcaaaaatactacat 73  Q
    |||| |||||| |||||||||||||||||||||||  ||||||||||||| ||  |||||  |||||||||||||    
T  2785709 gtccatgatatcgcactagtccctgaggagacgatacataaatacttactttttattgatagaaaaatactacat 2785635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 43328870 - 43328992
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| || ||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||| ||||    
T  43328870 tccactataagatgagtggtattctccctccacgctatgtccaaacctaggtacatgccccacatttcagcatgaaaagcatcacacattccaatattct 43328969  T
Q  180 tagtgtagcctttgatccatcta 202  Q
    |   |||||||||||||||||||    
T  43328970 tgaagtagcctttgatccatcta 43328992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 13186925 - 13186780
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  13186925 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatc 13186826  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  13186825 ttcttagtgtagcctttgatccatctaccgtctaaatcacgaaaaa 13186780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 7305242 - 7305389
Alignment:
Q  76 actttccactataagatgagagtaatgttccc--tccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaa 173  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7305242 actttccactataagatgagagtaatgttcccactccaagtcatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaa 7305341  T
Q  174 tcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  7305342 tctttttagtgtagtctttgatccatctaccgtctgaatcatgaaaaa 7305389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 40190581 - 40190726
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||  ||||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  40190581 actttccactataagatgagagtaatgctcgctccaagccatgtctaagtccaaatatagcccccacatcttagcatataaggcatcacaagctccaatc 40190680  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  40190681 ttcttaatgtagcctttgatccatctaacgtctgaatcacgaaaaa 40190726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12950797 - 12950722
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12950797 gtccgtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 12950722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13902178 - 13902254
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13902178 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaac 13902254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 37307445 - 37307523
Alignment:
Q  143 atctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    |||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37307445 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 37307523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 41455603 - 41455535
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacat 73  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41455603 gtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacat 41455535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34835033 - 34835108
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34835033 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 34835108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34841477 - 34841552
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34841477 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 34841552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2157613 - 2157539
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2157613 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 2157539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15852550 - 15852476
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15852550 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 15852476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 16817550 - 16817624
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16817550 gtccgcgatatcgcactagtccctgaggagacgatacaaatacttactattgtttgatgcaaaaatactacatca 16817624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 16856707 - 16856781
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16856707 gtccgcgatatcgcactagtccctgaggagacgatacaaatacttactattgtttgatgcaaaaatactacatca 16856781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29484927 - 29484853
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29484927 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 29484853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 36782406 - 36782480
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36782406 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 36782480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 42931593 - 42931667
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42931593 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 42931667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43267859 - 43267785
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43267859 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 43267785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 45011983 - 45011909
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45011983 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 45011909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36838144 - 36838069
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36838144 gtccgtgatatcgcactaatccctaaggagacgatataaatacttacttttgtttgatgcaaaaatactacatcaa 36838069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21332215 - 21332289
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  21332215 gtccgcgatatcgcactagtccctgaggatacgatataaatacttacaattgtttgatgcaaaaatactacatca 21332289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 2164023 - 2163954
Alignment:
Q  7 gatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  2164023 gatatcgcactagtccctgaggagactatataaatacttacaattgtttgatgcaaaaatactacatcaa 2163954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 2021675 - 2021743
Alignment:
Q  7 gatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  2021675 gatatcgcactagtccctgaggagacgatacaaatacttacaattgtttgatgcaaaaatactacatca 2021743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 26381464 - 26381576
Alignment:
Q  107 ctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatccatctaccgt 206  Q
    ||||||||||||||||| | |||||| | | ||||||||||||| ||||||  |||||| || |||||||||||||||||| |||| ||||||||||| |    
T  26381464 ctccaagccatgtccaatctcaaatacaacgcccacatctcagcttgtaagttatcacacgcaccaatcttcttagtgtagtctttaatccatctacctt 26381563  T
Q  207 ctgaatcacgaaa 219  Q
    |||| ||||||||    
T  26381564 ctgagtcacgaaa 26381576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 44611236 - 44611169
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44611236 atatcgcaccagtccctgtggagacgatataaatacttactattgtttgatgcaaaaatactacatca 44611169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21342103 - 21342177
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||    
T  21342103 gtccgcgatatcgcactagtccctgagaatacgatataaatacttacaattgtttgatgcaaaaatactacatca 21342177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21068179 - 21068252
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||| | ||||||||||| |||||||||||||||    
T  21068179 gtccgcgatatcgcactagtccctgaggagacgatacaaatactt-caattgtttgatgtaaaaatactacatca 21068252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 43669760 - 43669692
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| |||| |||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  43669760 atatcgcaccagtccctatggagacgatataaatatttattattgtttgatgcaaaaatactacatcaa 43669692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 33033745 - 33033678
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||| |||| |||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||    
T  33033745 atatcgcaccagtccctgtggagatgatacaaatacttacaattgtttgatgcaaaaatactacatca 33033678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 17784672 - 17784745
Alignment:
Q  5 gtgatattgcactagtccctgaggagacg--atataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||| |||||||||||||||||||||  ||||||||||||||| ||| |||||  ||||||||||||||||    
T  17784672 gtgatatcgcactagtccctgaggagacgatatataaatacttacttttgattgatagaaaaatactacatcaa 17784745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 13162805 - 13162737
Alignment:
Q  6 tgatattgcactagtccctgaggagacgatata-aatacttactattgtttgatgcaaaaatactacat 73  Q
    |||||| |||||||||||||||||||||||||| |||||||||| ||| |||||  |||||||||||||    
T  13162805 tgatatcgcactagtccctgaggagacgatatacaatacttacttttgattgatagaaaaatactacat 13162737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 11995904 - 11996025
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  11995904 tccactataagatgagtggtattctccctccacgccatgtccaaacctaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 11996003  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  11996004 tgaagtagcctttgatccatct 11996025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 42865855 - 42865734
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  42865855 tccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 42865756  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  42865755 tgaagtagcctttgatccatct 42865734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 37439717 - 37439788
Alignment:
Q  6 tgatattgcactagtccctgaggagacgatat-aaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||||| |||||||| |||||||||||||||| ||| ||||||| ||| |||||  ||||||||||||||||    
T  37439717 tgatatcgcactagtgcctgaggagacgatataaaacacttacttttgattgatagaaaaatactacatcaa 37439788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 24126584 - 24126705
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| ||||||| |||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  24126584 tccactataagatgagtggtattctccctccacgccatgttcaaacctaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 24126683  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  24126684 tgaagtagcctttgatccatct 24126705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 11910185 - 11910259
Alignment:
Q  5 gtgatattgcactagtccctgaggagacg--atataaatacttactattgtttgat-gcaaaaatactacatcaa 76  Q
    ||||||| |||||||||||||||||||||  ||||||| ||||||| ||| ||||| | ||||| ||||||||||    
T  11910185 gtgatatcgcactagtccctgaggagacgatatataaaaacttacttttgattgatagaaaaaaaactacatcaa 11910259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 24853209 - 24853243
Alignment:
Q  6 tgatattgcactagtccctgaggagacgatataaa 40  Q
    |||||| ||||||||||||||||||||||||||||    
T  24853209 tgatatcgcactagtccctgaggagacgatataaa 24853243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 3733098 - 3733159
Alignment:
Q  137 ccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatcca 198  Q
    ||||||||||| |||||||  |||||||| |  |||||||||||  ||||||||||||||||    
T  3733098 ccccacatctccgcatgtagagcatcacaagaaccaatcttcttcatgtagcctttgatcca 3733159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45700871 - 45700908
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatata 38  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  45700871 gtccgtgatatcgcactagtccctgagaagacgatata 45700908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 5308679 - 5308534
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  5308679 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatc 5308580  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  5308579 ttcttagtgtagcctttgatccatctaccgtttgaatcacgaaaaa 5308534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 23949735 - 23949590
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  23949735 actttccactataagatgagattaatgttccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatc 23949636  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23949635 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 23949590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 23085072 - 23085217
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  23085072 actttccactataagatgagagcaatgttccctccaagccatgtccagacccaaatatagaccccacatctcagcatgtaaggcatcacaagctccaatc 23085171  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23085172 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 23085217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 50952729 - 50952875
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50952729 actttccactataagattagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatc 50952828  T
Q  176 ttcttagtgt-agcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||    
T  50952829 ttcttagtgtaagcctttgatctatctaccgtctgaatcacgaaaaa 50952875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 22065363 - 22065509
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||| |||||||||    |||| |||||||||||||| || | ||||||||| | |||||| ||||||||||||||||||||||| |||||||||    
T  22065363 actttccacaataagatgatcaaaatgctccctccaagccatttctatacccaaatacaacccccaaatctcagcatgtaaggcatcacaagctccaatc 22065462  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaat 222  Q
    ||||||||||||||||| |||||| |||| |||| ||||||||||||    
T  22065463 ttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaat 22065509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42091897 - 42091823
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42091897 gtccgtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 42091823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4599529 - 4599455
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4599529 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 4599455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 38672993 - 38673061
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacat 73  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38672993 gtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacat 38673061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 11913485 - 11913556
Alignment:
Q  4 cgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11913485 cgtgatatcgcactagtccatgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 11913556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26621470 - 26621395
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26621470 gtccgcgatatcgcactagtccctgaggagacgatacaaatacttactattgtttgatgcaaaaatactacatcaa 26621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 28413895 - 28413966
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactaca 72  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28413895 gtccgtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatattaca 28413966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39053559 - 39053634
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39053559 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 39053634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6238656 - 6238582
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6238656 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 6238582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27240352 - 27240426
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27240352 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 27240426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 31072315 - 31072245
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31072315 gtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaactactacatca 31072245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32797737 - 32797663
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32797737 gtccgtgatatcgcactagtctctgaggagacgatataaatacttactattgtttgatgcaaaaataccacatca 32797663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 39059931 - 39060005
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39059931 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 39060005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43686628 - 43686554
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43686628 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 43686554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 45015782 - 45015708
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45015782 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 45015708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2825040 - 2825115
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  2825040 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatattacatcaa 2825115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 1116209 - 1116278
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1116209 gtgatatcgcactagtccctgaggagacgatataaatactta-tattgtttgatgcaaaaatactacatca 1116278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1174606 - 1174532
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  1174606 gtccatgatatcgcactagtccctgaggagatgatataaatacttacaattgtttgatgcaaaaatactacatca 1174532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5445184 - 5445255
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactaca 72  Q
    ||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  5445184 gtccgtgatatcgcactagtctctgaggagacaatataaatacttactattgtttgatgcaaaaataataca 5445255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 23764653 - 23764728
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| |||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  23764653 gtccgcgatatcgcactagtccctgaggagacgatacaaacacttacaattgtttgatgcaaaaatactacatcaa 23764728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 39806054 - 39805983
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||| |||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39806054 gtgatatcgcactagtccctaagaagacgatataaatacttaccattgtttgatgcaaaaatactacatcaa 39805983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 44241354 - 44241283
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44241354 gtgatatcgcaatagttcctgaggagacgatataaatatttactattgtttgatgcaaaaatactacatcaa 44241283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29001732 - 29001658
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  29001732 gtccgcgatatcgcactagtcccggaggagacgatacaaatacttacaattgtttgatgcaaaaatactacatca 29001658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 9869101 - 9869032
Alignment:
Q  6 tgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9869101 tgatatcgcgctagttcctgaggagacaatataaatacttactattgtttgatgcaaaaatactacatca 9869032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41299410 - 41299474
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaa 65  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  41299410 gtccgtgatatcgcactagtccctgaggagacgatacaaatacttagtattgtttgatgcaaaaa 41299474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41305736 - 41305800
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaa 65  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41305736 gtccgcgatatcgcactagtccctgaggagacgatacaaatacttactattgtttgatgcaaaaa 41305800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 27041164 - 27041109
Alignment:
Q  20 tccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27041164 tccctgtggagacgatataaatacttactattgtttgatgcaaaaatactacatca 27041109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41297517 - 41297442
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| |||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  41297517 gtccgcgatatcgcactagtccttgaggagacgatagaaatacttacaattatttgatgcaaaaatactacatcaa 41297442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 44916331 - 44916256
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||||||| |||||||||| | | ||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  44916331 gtccgtgatatcgcactagtccgtaatgagacgatataaatacttacttttgtttgatgcaaaaataccacatcaa 44916256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 6293954 - 6293833
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  6293954 tccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 6293855  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  6293854 tgaagtagcctttgatccatct 6293833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 2601220 - 2601107
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||| ||    |||| |||||||||||||| || | ||||||||| | | ||||| |||||   ||||||| ||||||  ||||||||    
T  2601220 actttccactataagacgaccaaaatgctccctccaagccatatctatacccaaatacaactcccacgtctca---tgtaaggtatcacaaactccaatc 2601124  T
Q  176 ttcttagtgtagccttt 192  Q
    | |||||||||||||||    
T  2601123 tacttagtgtagccttt 2601107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 16854887 - 16854763
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  ||| |||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  16854887 tccactataagatgagtggtattctccatccacgccatgtccaaacctaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 16854788  T
Q  180 tagtgtagcctttgatccatctacc 204  Q
    |   | |||||||||||||||||||    
T  16854787 tgaagcagcctttgatccatctacc 16854763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 15162154 - 15162217
Alignment:
Q  16 ctagtccctgaggagacgatata-aatacttactattgtttgatgcaaaaatactacatcaact 78  Q
    |||||||||| |||||||||||| |||||||||| | | |||||  ||||||||||||||||||    
T  15162154 ctagtccctgtggagacgatatacaatacttactttcgattgatagaaaaatactacatcaact 15162217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5357974 - 5358023
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacg--atataaatacttact 48  Q
    |||| |||||| |||||||||||||||||||||  |||||||||||||||    
T  5357974 gtccctgatatcgcactagtccctgaggagacgatatataaatacttact 5358023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 28705929 - 28705808
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| |||| |||||||||||  || |  |||||||| ||| |||| ||  |||||||   |||||||||||    
T  28705929 tccactataagatgagtggtattctccctccacgccaagtccaaacccatgtacatgccccacatttcaacatgaaaaacatcacacattccaatcttct 28705830  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  28705829 tgaagtagcctttgatccatct 28705808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 26616886 - 26617031
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  26616886 actttccactataagatgagagtaatgttccctccaagccatgtacaaacccaaatatagcacccaaatctcagcatgtaaggcatcacaagctccaatc 26616985  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26616986 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 26617031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 1636035 - 1635890
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  1636035 actttccactataagatgagagtaatattccctccaagtcatatccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatc 1635936  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  1635935 ttcttagtgtagcctttgatccatttaccgtctgaatcacgaaaaa 1635890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 456522 - 456662
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||     ||||||||||||||||||||||| |||| |||||||  ||||||||    
T  456522 actttccactataagatgagagtaatgttccttccaagccatgtccaaa-----atatagcccccacatctcagcatataagacatcacaaactccaatc 456616  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  456617 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 456662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 44145719 - 44145596
Alignment:
Q  99 aatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatcca 198  Q
    |||| |||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  44145719 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatcca 44145620  T
Q  199 tctaccgtctgaatcacgaaaaat 222  Q
    | |||| |||| ||||||||||||    
T  44145619 tttaccatctgcatcacgaaaaat 44145596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 8013541 - 8013616
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8013541 gtccgtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 8013616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 41242337 - 41242412
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41242337 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 41242412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6464797 - 6464871
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6464797 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 6464871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7311350 - 7311276
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7311350 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 7311276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15012389 - 15012315
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15012389 gtccgtgatatcgcactagtccctgaggagacgatataaatacttactattgtgtgatgcaaaaatactacatca 15012315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 16710890 - 16710964
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16710890 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 16710964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 36005703 - 36005777
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36005703 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 36005777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11358415 - 11358492
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaact 78  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11358415 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaact 11358492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 36075962 - 36075894
Alignment:
Q  7 gatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36075962 gatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 36075894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 7934155 - 7934222
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7934155 atatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 7934222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12768745 - 12768670
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12768745 gtccgtgatatcgcactagtctctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 12768670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 36022021 - 36022095
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36022021 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 36022095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1238214 - 1238140
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||    
T  1238214 gtccgtgatatcgcactagtccctgaggagacgatacaaatacttacaattgtttgatgcaaaaatattacatca 1238140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 36425952 - 36426026
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  36425952 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatacaacatca 36426026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 31017395 - 31017325
Alignment:
Q  6 tgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||||| |||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31017395 tgatatcgcactagtccataaagagacgatataaatacttactattgtttgatacaaaaatactacatcaa 31017325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 38560780 - 38560902
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    |||||||||||||||||||    |||| ||||||||| |||| || | ||||||||| | ||||||||||||| ||||||||||||||||  |||| ||     
T  38560780 actttccactataagatgatcaaaatgctccctccaaaccatctctatacccaaatacaacccccacatctcaacatgtaaggcatcacaaactccgata 38560879  T
Q  176 ttcttagtgtagcctttgatcca 198  Q
    |||| |||||||||||| |||||    
T  38560880 ttctcagtgtagcctttaatcca 38560902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 33373112 - 33373015
Alignment:
Q  104 tccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatccatct 201  Q
    |||||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   ||||||||||||   ||||||||||||||||||    
T  33373112 tccctccacgccatgtccaaacctaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttcttgaagtagcctttgatccatct 33373015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 45093379 - 45093258
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  45093379 tccactataagatgagtggtattctccctccacgccatgtccaaacctaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 45093280  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||| ||||||||    
T  45093279 tgaagtagcctttaatccatct 45093258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14393735 - 14393700
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgata 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14393735 gtccgtgatatcgcactagtccctgaggagacgata 14393700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 20670285 - 20670343
Alignment:
Q  107 ctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcaca 165  Q
    ||||||||||| || || |||||||| || |||||||||||||||||||  ||||||||    
T  20670285 ctccaagccatatcaaaccccaaataaagaccccacatctcagcatgtagagcatcaca 20670343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 18259301 - 18259446
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18259301 actttccactataagatgagagtaatgttccctccaaaccatgtccagacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatc 18259400  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  18259401 ttcttagtgtagtctttgatccatctaccgtctgaatcacgaaaaa 18259446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 34080900 - 34081045
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||    
T  34080900 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagctcccacttatcagcatgtaaggcatcacaagctccaatc 34080999  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34081000 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 34081045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33794093 - 33794018
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33794093 gtccgtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 33794018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34359300 - 34359376
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34359300 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaac 34359376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34357509 - 34357584
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34357509 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 34357584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 4560524 - 4560622
Alignment:
Q  124 acccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaat 222  Q
    ||||||||| | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||    
T  4560524 acccaaatacaacccccacatctcagtatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaat 4560622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 25894871 - 25894945
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25894871 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 25894945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 30041465 - 30041539
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30041465 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 30041539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42150819 - 42150745
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42150819 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 42150745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2966328 - 2966253
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  2966328 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgaaaaaatactacatcaa 2966253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2156339 - 2156413
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2156339 gtccgcgatatcacactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 2156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2957859 - 2957785
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  2957859 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgaaaaaatactacatca 2957785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 5876213 - 5876144
Alignment:
Q  7 gatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  5876213 gatatcgcactagtccctgaggagacgatacaaatacttacaattgtttgatgcaaaaatactacatcaa 5876144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 2438798 - 2438738
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaa 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2438798 gtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaa 2438738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 18934090 - 18933974
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||| |||||||||    |||| |||||| ||||||| || | ||||||||| | || ||||||||||||||||||||||||||| |||||||||    
T  18934090 actttccacaataagatgatcaaaatgctccctctaagccatctctatacccaaatacaacctccacatctcagcatgtaaggcatcacaagctccaatc 18933991  T
Q  176 ttcttagtgtagccttt 192  Q
    || ||||||||||||||    
T  18933990 tttttagtgtagccttt 18933974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 40821562 - 40821630
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821562 atatcgcaccagtccctgtggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 40821630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22359965 - 22359890
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| |||||  ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  22359965 gtccgcgatatcacactagtccctgaggagacgatacaaatacttacaattgtttgatgcaaaaatactacatcaa 22359890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29414890 - 29414964
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  29414890 gtccgcgatatcgcactagtccctaaggagacgatacaaatacttacaattgtttgatgcaaaaatactacatca 29414964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 9843343 - 9843286
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaa 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9843343 atatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaa 9843286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29980460 - 29980397
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaa 64  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29980460 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaa 29980397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40958838 - 40958912
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  40958838 gtccgcgatatcgcactagtccccgaggagacgatataaatacttataattgtttgatgcaataatactacatca 40958912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 18883416 - 18883271
Alignment:
Q  78 tttccactataagatgagagtaatgttccctccaagccatgtcca-aacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatct 176  Q
    |||||||||||||||||    |||| |||||||||||||| |  | | |||||||| | ||||||||||||| || ||||||||||||| | ||||||||    
T  18883416 tttccactataagatgatcaaaatgctccctccaagccatatttataccccaaatacaacccccacatctcaacaagtaaggcatcacaagttccaatct 18883317  T
Q  177 tcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaat 222  Q
    | |||||| ||||||| |||||| |||| |||| |||| |||||||    
T  18883316 tattagtgcagcctttaatccatttaccatctgcatcatgaaaaat 18883271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 4973560 - 4973500
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaa 65  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  4973560 gtgatatcgcactagtccctgaggagacgatacaaatacttacaattgtttgatgcaaaaa 4973500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 22313824 - 22313756
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| |||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||||    
T  22313824 atatcgcactagtccctaaggagacgatacaaatacttacaattgtttgattcaaaaatactacatcaa 22313756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 14024873 - 14024752
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||||||||||||||| |  ||  |||||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  14024873 tccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 14024774  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  14024773 tgaagtagcctttgatccatct 14024752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 32386426 - 32386305
Alignment:
Q  80 tccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttct 179  Q
    |||| ||||||||||| || ||  |||||||| |||||||||||||| |  || |  |||||||| |||||||| || ||||||||   |||||||||||    
T  32386426 tccagtataagatgagtgttattctccctccatgccatgtccaaacctaggtacatgccccacatttcagcatgaaaagcatcacacattccaatcttct 32386327  T
Q  180 tagtgtagcctttgatccatct 201  Q
    |   ||||||||||||||||||    
T  32386326 tgaagtagcctttgatccatct 32386305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 34738186 - 34738120
Alignment:
Q  13 gcactagtccctgaggagacga--tataaatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    ||||||||||||||||||||||  ||||||||||||||  || |||||  |||||||||||||||||    
T  34738186 gcactagtccctgaggagacgatatataaatacttacttctgattgatagaaaaatactacatcaac 34738120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 3664059 - 3663995
Alignment:
Q  13 gcactagtccctgaggagacgat-ataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||||||||||| |||||||||| | ||||||||||| ||| |||||  ||||||||||||||||    
T  3664059 gcactagtccctaaggagacgattacaaatacttacttttgattgatagaaaaatactacatcaa 3663995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 32216752 - 32216680
Alignment:
Q  149 gcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 221  Q
    |||| |||||||| |||  | |||||||||||| |||||||||| ||||||||||||||  | ||||||||||    
T  32216752 gcatataaggcatgacacacaccaatcttcttattgtagcctttaatccatctaccgtccaagtcacgaaaaa 32216680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 22540247 - 22540215
Alignment:
Q  76 actttccactataagatgagagtaatgttccct 108  Q
    |||||| ||||||||||||||||||||||||||    
T  22540247 actttcaactataagatgagagtaatgttccct 22540215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 1223124 - 1223270
Alignment:
Q  76 actttccactataagatgagagtaatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatc 175  Q
    ||||||||| |||||||||    |||| |||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||| |||||||||    
T  1223124 actttccacaataagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatc 1223223  T
Q  176 ttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaat 222  Q
    ||||||||||||||||| |||||| |||| | ||  |||||||||||    
T  1223224 ttcttagtgtagcctttaatccatttaccatatgcgtcacgaaaaat 1223270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 30117493 - 30117564
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30117493 gtgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 30117564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34711778 - 34711853
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34711778 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 34711853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 1428644 - 1428718
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1428644 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 1428718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11058371 - 11058445
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11058371 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 11058445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4020457 - 4020532
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4020457 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 4020532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 7062705 - 7062780
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7062705 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 7062780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 7069921 - 7069996
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7069921 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 7069996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 29906887 - 29906816
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29906887 gtgatatcgcactagtccctaaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 29906816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32328714 - 32328789
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32328714 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 32328789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 34648800 - 34648725
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34648800 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 34648725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 34655251 - 34655176
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34655251 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 34655176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4026883 - 4026957
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4026883 gtccgcgatatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 4026957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 4738553 - 4738619
Alignment:
Q  9 tattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4738553 tattgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatca 4738619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 21262797 - 21262871
Alignment:
Q  2 tccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21262797 tccgcgatatcgcactagtccctgaggagacgatacaaatacttactattgtttgatgcaaaaatactacatcaa 21262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9864982 - 9865057
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  9864982 gtccgcgatatcgcactagtccctgaggagaagatataaatacttacaattgtttgatgcaaaaatactacatcaa 9865057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13672038 - 13672113
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13672038 gtccgcgatatcgcactagtccctaaggagacgagataaatacttactattgtttgatgcaaaaatactacatcaa 13672113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 7825981 - 7825913
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7825981 atatcgcaccagtccctgtggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 7825913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 10800803 - 10800871
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10800803 atatcgcaccagtccctgtggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 10800871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 4186679 - 4186612
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  4186679 atatcgcactagtccctgaggagacgatataaatacttacaattgtttgaggcaaaaatactacatca 4186612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 27670090 - 27670020
Alignment:
Q  6 tgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  27670090 tgatatcgcactagtctctgaggagacgatataaatatttactattgtttgatgcaaaaatattacatcaa 27670020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 24908414 - 24908347
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    |||| |||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24908414 atatcgcaccagtccctatggagacgatataaatacttactattgtttgatgcaaaaatactacatca 24908347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1167716 - 1167795
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatat-aaatacttactattgtttgatgcaaaaatactacatcaactt 79  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| | |  |||||||||||||||||||||    
T  1167716 gtccgtgatatcgcactagtccctgaggagacgatataaaatacttacttttgatcgtggcaaaaatactacatcaactt 1167795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 1461244 - 1461189
Alignment:
Q  21 ccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  1461244 ccctgaggagacgatataaatacttacaattgtttgatgcaaaaatattacatcaa 1461189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 14118790 - 14118858
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| |||| |||||||  |||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  14118790 atatcgcaccagtccctatggagacgatacaaatacttaaaattgtttgatgcaaaaatactacatcaa 14118858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31547896 - 31547833
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaa 64  Q
    ||||| ||||| |||||||||||| | |||||||||||||||||||  ||||||||||| ||||    
T  31547896 gtccgcgatatcgcactagtccctaaagagacgatataaatacttataattgtttgatgtaaaa 31547833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 11015249 - 11015215
Alignment:
Q  6 tgatattgcactagtccctgaggagacgatataaa 40  Q
    |||||| ||||||||||||||||||||||||||||    
T  11015249 tgatatcgcactagtccctgaggagacgatataaa 11015215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 9517879 - 9517818
Alignment:
Q  16 ctagtccctgaggagacgatata-aatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||| || |||||||||||| |||||||||| ||| |||||  ||||||||||||||||    
T  9517879 ctagtccttgtggagacgatatacaatacttacttttgattgatagaaaaatactacatcaa 9517818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6986 - 6911
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6986 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5226 - 5300
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5226 gtccgcgatatcgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 5300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 49688 - 49616
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaac 77  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49688 gtgatatcgcactagtccctgaggagacgatacaaatacttactattgtttgatgcaaaaatactacatcaac 49616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 55668 - 55598
Alignment:
Q  6 tgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  55668 tgatatcgcactagtccctgaggagacgatacaaatacttactattgtttgatgcaacaatactacatcaa 55598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 15168 - 15098
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15168 gtgatatcgcactagtccctgaggagacgatataaatacttactattgtttaatgcaaaaatactacatca 15098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 9355 - 9423
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9355 atatcgcactagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatactacatcaa 9423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 2973 - 3041
Alignment:
Q  8 atattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    |||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  2973 atatcgcattagtccctgaggagacgatataaatacttacaattgtttgatgcaaaaatattacatcaa 3041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 24471 - 24541
Alignment:
Q  5 gtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  24471 gtgatatcgcactagtccctgaggagacgatataaatacttaatattgtttgatgctaaaatactacatca 24541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 2634 - 2574
Alignment:
Q  13 gcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacat 73  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2634 gcactagtccctgaggagacgatagaaatacttactattgtttgatgcaaaaatactacat 2574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0936 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0936
Description:

Target: scaffold0936; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 3484 - 3559
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||||||||| |||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  3484 gtccgtgatatcgcactaatctctgaggagacgatataactacttgctattgtttgatgcaaaaatactacatcaa 3559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11951 - 11876
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  11951 gtccgcgatatcgcactagtccctgaggagacgatacaaatacttacaattatttgatgcaaaaatactacatcaa 11876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 99915 - 99840
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| |||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  99915 gtccgcgatatcgcacaagtccctgagaagacgatacaaatacttactattgtttgatgcaaaaatactacatcaa 99840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2782 - 2846
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaa 65  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  2782 gtccgtgatatcgcactagtccctgaggagacgatacaaatacttagtattgtttgatgcaaaaa 2846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9103 - 9178
Alignment:
Q  1 gtccgtgatattgcactagtccctgaggagacgatataaatacttactattgtttgatgcaaaaatactacatcaa 76  Q
    ||||| ||||| |||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  9103 gtccgcgatatcgcactagtccttgaggagacgatagaaatacttacaattatttgatgcaaaaatactacatcaa 9178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 4786 - 4718
Alignment:
Q  8 atattgcactagtccctgaggagacgatata-aatacttactattgtttgatgcaaaaatactacatca 75  Q
    ||||||| |||||||||| |||||| ||||| |||||||||| ||| |||||  |||||||||||||||    
T  4786 atattgcgctagtccctgtggagacaatatacaatacttacttttgattgatagaaaaatactacatca 4718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 355912 - 355796
Alignment:
Q  104 tccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttgatccatctac 203  Q
    |||||||||||||  || | ||||||||| | |||| |||| || ||||||||||||||| || || ||||| |||||||||| ||||| || ||| |||    
T  355912 tccctccaagccacatctatacccaaatacaacccc-acatttcggcatgtaaggcatcaaagacttcaatcgtcttagtgtatcctttaattcatttac 355814  T
Q  204 cgtctgaatcacgaaaaa 221  Q
    | |  ||||||| |||||    
T  355813 catacgaatcacaaaaaa 355796  T

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