View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18679_low_5 (Length: 519)
Name: NF18679_low_5
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18679_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 58 - 503
Target Start/End: Complemental strand, 25324304 - 25323856
Alignment:
| Q |
58 |
aaatcgacatctaagattttgagagaagcatactctaaagtctcaagctaagatcatcggaccaactcaagtggatataattaaacggactgttaaatct |
157 |
Q |
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||||||||| |||||| |||||||| |||||||||||||||||||| |||||| ||||| | |||||||||||| ||||||||||||||||||||||||| |
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| T |
25324304 |
aaatcgacacctaagactttgagaggagcatactctaaagtctcaaactaagaccatcgaatcaactcaagtgggtataattaaacggactgttaaatct |
25324205 |
T |
|
| Q |
158 |
tcttcatacaaagataattgtcggaattaagatatagtctgaaattaagatttaatctttggtcctttaaggtgtatgagttaggatgctaaataaattt |
257 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25324204 |
tcttcatacaaagataattttcggaattaagatttagtctgaaattaagatttaatctttggtcctttaaggtgtatgagttaggatgctaaataaattt |
25324105 |
T |
|
| Q |
258 |
tatgaaagaggtgtagaattcaaacccatgcttctaataaattcccttctccctaaaaaagtaaccaccaacttcactttnnnnnnnnnnnnnta----t |
353 |
Q |
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|||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |
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| T |
25324104 |
tatg-aagaggggtagagttcaaacccatgcttctaataaattcccttctccctaaaaaagtaaccaccaacctcactttaaaaaaataaataaataatt |
25324006 |
T |
|
| Q |
354 |
tgaacaatcttgattttctagacctatataaggttttctcaagtcttaagcttttagtatatattagaattttatcttaaaccaatagaatcttaannnn |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25324005 |
tgaacaatcttgattttctagacctatataaggttttctcaagtcttaagcttttagtatatattagaattttatcttaaaccaatagaatcttaatttt |
25323906 |
T |
|
| Q |
454 |
nnnnnatagaacaaatggaatcttaatctttgtcatacaatggtaatagt |
503 |
Q |
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| T |
25323905 |
tttttatagaacaaatggaatcttaatctttgtcatacaatggtaatagt |
25323856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 25324370 - 25324340
Alignment:
| Q |
1 |
aaattaatactttttatcttaaataaatgga |
31 |
Q |
| |
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| T |
25324370 |
aaattaatactttttatcttaaataaatgga |
25324340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 26061738 - 26061691
Alignment:
| Q |
84 |
agcatactctaaagtctcaagctaagatcatcggaccaactcaagtgg |
131 |
Q |
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|||||||||| |||||||||||||| |||||| |||||||||| |||| |
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| T |
26061738 |
agcatactctcaagtctcaagctaatatcatcagaccaactcatgtgg |
26061691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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