View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18679_low_8 (Length: 455)
Name: NF18679_low_8
Description: NF18679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18679_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 54978329 - 54977900
Alignment:
| Q |
13 |
aatatcaaaaccgcattcatcacgcatcaattcagagtcacaaccccaaatagcacatctagaactttttgccccggccatatgtggatgcttgtccaaa |
112 |
Q |
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| T |
54978329 |
aatatcaaaaccgcattcatcacgcatcaattcagagtcacaaccccaaatagcacatctagaactttttgccccggccatatgtggatggttgtccaaa |
54978230 |
T |
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| Q |
113 |
ccgttactcaactttctacgcttatggttg---tcgaatctttctggcgaatccattggttggttatcaggagttggtggtgtccacactgtataattct |
209 |
Q |
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| T |
54978229 |
ccgttactcaactttctacgcttatggttgcagtcgaatctttctggcgaatccattggttggttatcaggagttggtggtgtccacactgtataattct |
54978130 |
T |
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| Q |
210 |
ccgccaaatcatcatcaattcgtagcttgcaatcaaaaacttcttcaattattggatactccaaaggaggattatgtgcttcagacgcatcagaagtgtc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54978129 |
ccgccaaatcatcatcaattcgtagcttgcaatcaaaaacttcttcaattattggatactccaaaggaggattatgtgcttcagacgcatcagaagtgtc |
54978030 |
T |
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| Q |
310 |
tggcacatttactgattttgatggcatatttgaggacaaagattcatccatcctaaattaaataaatatcatggaattcagaaattcagcacatcaaaat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54978029 |
tggcacatttactgattttgatggcatatttgaggacaaagattcatccatcctaaattaaataaatatcatggaattcagaaattcagcacatcaaaat |
54977930 |
T |
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| Q |
410 |
ttaaattaagttcattccacttgcaatgaa |
439 |
Q |
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| T |
54977929 |
ttaaattaagttcattccacttgcaatgaa |
54977900 |
T |
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