View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_high_12 (Length: 378)
Name: NF1867_high_12
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 33866400 - 33866739
Alignment:
| Q |
1 |
aaacaaatgaaagatggaaaagaacttgttcttaaatgttctaatgaagacaaaatccagtggtggaattgttgttacaaaaaagcacagtatcaagaac |
100 |
Q |
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| T |
33866400 |
aaacaaatgaaagatggaaaagaacttgttctaaaatgttctaatgaagacaaaatccagtggtggaattgttgttacaaaaaagcacagtatcaagaac |
33866499 |
T |
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| Q |
101 |
agcttgaatcattggatgaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgattggattggaaacacatttggagattaaaga |
200 |
Q |
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| T |
33866500 |
aacttgaagcattggatgaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgactggattggaaacacttttggagattaaaga |
33866599 |
T |
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| Q |
201 |
gtttcgtgctgaaattcg-aag--tattcttgtgaggaatgaaaggattgaatt-agagaatatttgtcggcctcctgaaccacctggttttattgttgg |
296 |
Q |
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| T |
33866600 |
gtttcgtgctgaatttagtaaggctaatgttgggagaagtgaaagagttgaattaagag-gtgtttgtttgccacctcaaccacctggttttattgttgg |
33866698 |
T |
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| Q |
297 |
gttggatgagactttcaataagttgaaggagatattgttga |
337 |
Q |
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| T |
33866699 |
gttggatggtcctttgaatgagttgaagatgagattgttga |
33866739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 33882219 - 33882404
Alignment:
| Q |
1 |
aaacaaatgaaagatggaaaagaacttgttcttaaatgttctaatgaagacaaaatccagtggtggaattgttgttacaaaaaagcacagtatcaagaac |
100 |
Q |
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| T |
33882219 |
aaacaaatgaaagatggaaaagaacttgttctaaaatgttctaatgaagacaaaatccagtggtggaattgttggtacaaaaaagcacagtatcaagaag |
33882318 |
T |
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| Q |
101 |
agcttgaatcattggatgaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgattggattggaaacacat |
186 |
Q |
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| T |
33882319 |
aacttgaagcattggatgaaaagattaaaagattctttgatcttgatttgatagctcaaattgcaaggactggattggaaacacat |
33882404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 33882446 - 33882609
Alignment:
| Q |
207 |
tgctgaaattcgaagtattcttgtgaggaatgaaaggattga------attagagaatatttgtcggcctcctgaaccacctggttttattgttgggttg |
300 |
Q |
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| T |
33882446 |
tgctgaaattcgaagtgttcttgtgaggactgaaaggattgaatttgaattagagaatatttgtcggcctcctaaaccacctggttttattgttgggtcg |
33882545 |
T |
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| Q |
301 |
gatgagactttcaataagttgaaggagatattgttgagtaagaagaatgagcttagtgtctctg |
364 |
Q |
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| T |
33882546 |
gatgagactttcaataagttgaaggagatattgttgagtaagaagaatgagcttagtgtctctg |
33882609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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