View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1867_high_2 (Length: 571)

Name: NF1867_high_2
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1867_high_2
NF1867_high_2
[»] chr7 (12 HSPs)
chr7 (16-571)||(28598101-28598656)
chr7 (456-571)||(6056248-6056363)
chr7 (464-557)||(44481296-44481389)
chr7 (461-537)||(24251645-24251721)
chr7 (461-527)||(16732139-16732205)
chr7 (461-527)||(17710273-17710339)
chr7 (472-546)||(24139228-24139302)
chr7 (461-527)||(29200870-29200936)
chr7 (461-514)||(9328530-9328583)
chr7 (461-514)||(30824422-30824475)
chr7 (461-513)||(22289447-22289499)
chr7 (456-512)||(47580076-47580132)
[»] chr8 (6 HSPs)
chr8 (16-248)||(12326266-12326495)
chr8 (461-537)||(477961-478037)
chr8 (463-567)||(8670189-8670293)
chr8 (465-537)||(11870474-11870546)
chr8 (461-527)||(7127429-7127495)
chr8 (461-546)||(40588626-40588711)
[»] chr4 (14 HSPs)
chr4 (456-571)||(21163315-21163430)
chr4 (456-571)||(39251577-39251692)
chr4 (456-571)||(40727164-40727279)
chr4 (461-546)||(49951519-49951604)
chr4 (461-514)||(32576976-32577029)
chr4 (461-513)||(51259458-51259510)
chr4 (461-537)||(51734877-51734953)
chr4 (466-537)||(29655571-29655642)
chr4 (465-569)||(33582900-33583001)
chr4 (461-527)||(37245767-37245833)
chr4 (461-514)||(28426389-28426442)
chr4 (461-514)||(49119328-49119381)
chr4 (461-513)||(44936011-44936063)
chr4 (461-513)||(56065839-56065891)
[»] chr1 (11 HSPs)
chr1 (456-571)||(17975231-17975346)
chr1 (456-571)||(13075901-13076015)
chr1 (456-524)||(23756386-23756454)
chr1 (464-571)||(323774-323881)
chr1 (461-546)||(5609545-5609630)
chr1 (464-546)||(4395367-4395449)
chr1 (465-557)||(24538697-24538789)
chr1 (461-537)||(51113521-51113597)
chr1 (461-514)||(44527459-44527512)
chr1 (461-514)||(44602958-44603011)
chr1 (461-513)||(48949653-48949705)
[»] chr3 (8 HSPs)
chr3 (456-571)||(18720840-18720955)
chr3 (461-571)||(49525065-49525175)
chr3 (461-546)||(34497268-34497353)
chr3 (461-513)||(55199717-55199769)
chr3 (465-527)||(26046898-26046960)
chr3 (461-511)||(42340208-42340258)
chr3 (461-514)||(53497238-53497291)
chr3 (461-513)||(27608832-27608884)
[»] chr5 (10 HSPs)
chr5 (456-571)||(32378146-32378260)
chr5 (461-546)||(23075038-23075123)
chr5 (461-546)||(22767169-22767254)
chr5 (461-513)||(26597386-26597438)
chr5 (461-537)||(27532811-27532887)
chr5 (461-546)||(4268305-4268390)
chr5 (461-514)||(20205161-20205214)
chr5 (461-546)||(25731014-25731099)
chr5 (461-546)||(27292640-27292724)
chr5 (461-513)||(8388292-8388344)
[»] chr6 (7 HSPs)
chr6 (458-571)||(22534501-22534614)
chr6 (477-571)||(5542589-5542683)
chr6 (456-567)||(33792019-33792130)
chr6 (461-514)||(11731597-11731650)
chr6 (461-503)||(3100452-3100494)
chr6 (463-513)||(27443141-27443191)
chr6 (461-514)||(14680368-14680421)
[»] chr2 (6 HSPs)
chr2 (456-565)||(25538098-25538207)
chr2 (461-537)||(34695809-34695885)
chr2 (461-537)||(34718221-34718297)
chr2 (461-514)||(9710161-9710214)
chr2 (461-534)||(13109777-13109850)
chr2 (461-514)||(12130566-12130619)
[»] scaffold0252 (1 HSPs)
scaffold0252 (463-571)||(13329-13435)
[»] scaffold0003 (1 HSPs)
scaffold0003 (463-513)||(44170-44220)
[»] scaffold0446 (1 HSPs)
scaffold0446 (461-513)||(396-448)


Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Complemental strand, 28598656 - 28598101
Alignment:
Q  16 ctatgttccttgaacttgctttggctgcaatggatgagttggtgaagatggcacaaactaatgaacctctttggattagaagtgttgaaagtggaaaaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28598656 ctatgttccttgaacttgctttggctgcaatggatgagttggtgaagatggcacaaacaaatgaacctctttggattagaagtgttgaaagtggaaaaga 28598557  T
Q  116 aatttttaatcatgaggaatatacaaggattattagtactccttgtattggtttgaaaccaaatggttttgtttctgaggcttctagagaaagtggtgtt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598556 aatttttaatcatgaggaatatacaaggattattagtactccttgtattggtttgaaaccaaatggttttgtttctgaggcttctagagaaagtggtgtt 28598457  T
Q  216 gttatcataaacagcttggctcttgttgaaactttaatggattcagtaagcctttttcaactacttcattcaattttctccaacttctcttcttagcctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598456 gttatcataaacagcttggctcttgttgaaactttaatggattcagtaagcctttttcaactacttcattcaattttctccaacttctcttcttagcctt 28598357  T
Q  316 tcaattattcttggcttaggatgatttatttatttttcattttacatggatgaatatatttagtactatagtaaaatttattaagaaaaaattgaagaaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28598356 tcaattattcttggcttaggatgatttatttatttttcattttacatggatgaatatatttagtactatagtagaatttattaagaaaaaattgaagaaa 28598257  T
Q  416 tgaaaattattattaataccggcgacactaatgactactcttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacg 515  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28598256 tgaaaattattattaataccggtgacactaatgactactcctattttccaactttgaggtgaagtttgtcaggcgtcaagcaaacatggctgctcatacg 28598157  T
Q  516 attgctagggcgacatgttcttagcctagtcgccatgtttttgagatttgtcctcc 571  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  28598156 attgctagggcggcatattcttagcctagtcgccatgtttttgagatttgtcctcc 28598101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 456 - 571
Target Start/End: Complemental strand, 6056363 - 6056248
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 555  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  6056363 ttattttccaactttgaggtgaagtttgttgggcgtcaagcgaacatggttgttcatacgattgctagggcggcatgttcttggcctagtcgccatgttt 6056264  T
Q  556 ttgagatttgtcctcc 571  Q
    || | |||||||||||    
T  6056263 tttaaatttgtcctcc 6056248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 464 - 557
Target Start/End: Original strand, 44481296 - 44481389
Alignment:
Q  464 caactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttttt 557  Q
    |||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | ||||||| | |||||| |||| |||||    
T  44481296 caacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccatattttt 44481389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 537
Target Start/End: Original strand, 24251645 - 24251721
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 537  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | |||||||    
T  24251645 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttctt 24251721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 527
Target Start/End: Original strand, 16732139 - 16732205
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 527  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | |||||||||    
T  16732139 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcg 16732205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 527
Target Start/End: Original strand, 17710273 - 17710339
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 527  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | |||||||||    
T  17710273 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcg 17710339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 546
Target Start/End: Original strand, 24139228 - 24139302
Alignment:
Q  472 aggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    ||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | ||||||| | ||||||    
T  24139228 aggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 24139302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 527
Target Start/End: Complemental strand, 29200936 - 29200870
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 527  Q
    ||||||||| |||||||||||||| ||| | ||| ||||||||| |||||||||  | |||||||||    
T  29200936 ttccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctagggcg 29200870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Complemental strand, 9328583 - 9328530
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    ||||||||| || ||||||||||| ||| | ||||||||||||| |||||||||    
T  9328583 ttccaacttcgatgtgaagtttgttaggagacaagcgaacatggttgctcatac 9328530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Complemental strand, 30824475 - 30824422
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    |||||||||||| ||||||||||| ||| |  |||||||||||| |||||||||    
T  30824475 ttccaactttgaagtgaagtttgttaggagataagcgaacatggttgctcatac 30824422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 22289447 - 22289499
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    ||||||||| ||||||| |||||| ||| | ||||||||||||| ||||||||    
T  22289447 ttccaacttcgaggtgatgtttgttaggagacaagcgaacatggttgctcata 22289499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 512
Target Start/End: Original strand, 47580076 - 47580132
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcat 512  Q
    |||| ||||||||| |||||||||||||  ||| | ||||||||||||| |||||||    
T  47580076 ttatattccaacttcgaggtgaagtttggtaggagacaagcgaacatggttgctcat 47580132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 12326495 - 12326266
Alignment:
Q  16 ctatgttccttgaacttgctttggctgcaatggatgagttggtgaagatggcacaaactaatgaacctctttggattagaagtgttgaaagtggaaaaga 115  Q
    ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||| ||| | ||| | ||||  ||    
T  12326495 ctatgtttcttgaacttgctttggctgctatggatgagttggttaagatggcacaaactagtgaccctctttggattaggagtatagaaggaggaaggga 12326396  T
Q  116 aatttttaatcatgaggaatatacaaggattattagtactccttgtattggtttgaaaccaaatggttttgtttctgaggcttctagagaaagtggtgtt 215  Q
    |||||| || |||||||||||||  | ||  |||   |||||||| |||||||||||||| |||||||||||||||||||| || || |||| ||||  |    
T  12326395 aattttgaaccatgaggaatatatga-gaacatt--cactccttgcattggtttgaaacctaatggttttgtttctgaggcctcaagggaaactggtact 12326299  T
Q  216 gttatcataaacagcttggctcttgttgaaact 248  Q
    || ||||| || |||||||| ||||||||||||    
T  12326298 gtcatcatcaatagcttggcccttgttgaaact 12326266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 537
Target Start/End: Complemental strand, 478037 - 477961
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 537  Q
    |||||||||  ||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | |||||||    
T  478037 ttccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcataccttagctagggcgtcctgttctt 477961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 567
Target Start/End: Complemental strand, 8670293 - 8670189
Alignment:
Q  463 ccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagat 562  Q
    ||||||||||||| |||||||| ||||| ||| | ||||||| |||||| ||  || |||||||| | ||||||| | |||||| || | | ||||||||    
T  8670293 ccaactttgaggtaaagtttgttaggcgacaaacaaacatggttgctcacactcttactagggcggcctgttcttggactagtcaccgtatctttgagat 8670194  T
Q  563 ttgtc 567  Q
    |||||    
T  8670193 ttgtc 8670189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 537
Target Start/End: Original strand, 11870474 - 11870546
Alignment:
Q  465 aactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 537  Q
    ||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | |||||||| || |||||||    
T  11870474 aacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcaacctgttctt 11870546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 527
Target Start/End: Original strand, 7127429 - 7127495
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 527  Q
    |||||||||||| ||||||||||| ||| | ||||||||||||  |||||||||  | |||||||||    
T  7127429 ttccaactttgatgtgaagtttgttaggagacaagcgaacatgattgctcatactttagctagggcg 7127495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 546
Target Start/End: Complemental strand, 40588711 - 40588626
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||  ||| |||||  | ||||||||| | ||||||| | ||||||    
T  40588711 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatgattgcacatactttagctagggcggcctgttcttgggctagtc 40588626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 456 - 571
Target Start/End: Complemental strand, 21163430 - 21163315
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  21163430 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatgactgctcatacgattgctaaggcgacatgttcttgacctagtcaccatgttt 21163331  T
Q  556 ttgagatttgtcctcc 571  Q
    || ||||| |||||||    
T  21163330 tttagattcgtcctcc 21163315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 456 - 571
Target Start/End: Complemental strand, 39251692 - 39251577
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 555  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||   ||||||||| |||||| ||||||||||    
T  39251692 ttattttccaactttgaggtgaagtttatcaggcgtcaagtgaacgtggctgctcatacgattgctagggtagcatgttcttggcctagacgccatgttt 39251593  T
Q  556 ttgagatttgtcctcc 571  Q
    ||||||||||||||||    
T  39251592 ttgagatttgtcctcc 39251577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 456 - 571
Target Start/End: Original strand, 40727164 - 40727279
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 555  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||| | |||||||||||||||||||| |||||||| || ||||||||||||||| |    
T  40727164 ttattttccaactttgaggtgaagtttgttaggcgtcaagcgagcatagttgctcatacgattgctagggagacatgtttttggcctagtcgccatgtat 40727263  T
Q  556 ttgagatttgtcctcc 571  Q
    ||||||||||||||||    
T  40727264 ttgagatttgtcctcc 40727279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 546
Target Start/End: Original strand, 49951519 - 49951604
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | ||||||| | ||||||    
T  49951519 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 49951604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 514
Target Start/End: Complemental strand, 32577029 - 32576976
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||    
T  32577029 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatac 32576976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 51259510 - 51259458
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||    
T  51259510 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcata 51259458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 537
Target Start/End: Complemental strand, 51734953 - 51734877
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 537  Q
    ||||||||| |||||||||||||| ||| | |||| |||||||| |||||||||  | ||||||||| | |||||||    
T  51734953 ttccaacttcgaggtgaagtttgttaggtgacaagtgaacatggttgctcatactttagctagggcggcctgttctt 51734877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 537
Target Start/End: Complemental strand, 29655642 - 29655571
Alignment:
Q  466 actttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 537  Q
    |||| ||| |||||||||| ||| | ||||||||||||| |||||||||  | ||||||||||| |||||||    
T  29655642 acttcgagatgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcgacctgttctt 29655571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 569
Target Start/End: Original strand, 33582900 - 33583001
Alignment:
Q  465 aactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagattt 564  Q
    ||||||||||| ||||||   ||||| |||||||||||||||||||| ||  |||||| |||| | ||||||| | ||||||  | | | ||||||||||    
T  33582900 aactttgaggtaaagttt---aggcgacaagcgaacatggctgctcacactcttgctaaggcggcttgttcttgggctagtcatcgtatatttgagattt 33582996  T
Q  565 gtcct 569  Q
    |||||    
T  33582997 gtcct 33583001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 527
Target Start/End: Complemental strand, 37245833 - 37245767
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 527  Q
    ||||||||| |||||||||||||| ||| | ||| ||||||||| |||||||||  | |||||||||    
T  37245833 ttccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatactttagctagggcg 37245767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 28426389 - 28426442
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    ||||||||| |||| ||||||||| ||| | ||||||||||||| |||||||||    
T  28426389 ttccaacttcgaggagaagtttgttaggagacaagcgaacatggttgctcatac 28426442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Complemental strand, 49119381 - 49119328
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    ||||||||| |||| ||||||||| ||| | ||||||||||||| |||||||||    
T  49119381 ttccaacttcgaggagaagtttgttaggagacaagcgaacatggttgctcatac 49119328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 44936063 - 44936011
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    ||||||||| |||||||||||||| ||  | ||||||||||||| ||||||||    
T  44936063 ttccaacttcgaggtgaagtttgttagcagacaagcgaacatggttgctcata 44936011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 56065839 - 56065891
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    ||||||||| ||| |||||||||| ||| | ||||||||||||| ||||||||    
T  56065839 ttccaacttcgagatgaagtttgttaggagacaagcgaacatggttgctcata 56065891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 456 - 571
Target Start/End: Original strand, 17975231 - 17975346
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 555  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| |||||||| || |||||||||||||||||    
T  17975231 ttattttccaaatttgaggtgaagtttgtcaggcgtcaaacgaacatgactgctcatacaattgctagggagacatgtttttggcctagtcgccatgttt 17975330  T
Q  556 ttgagatttgtcctcc 571  Q
    ||||||||||||||||    
T  17975331 ttgagatttgtcctcc 17975346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 456 - 571
Target Start/End: Complemental strand, 13076015 - 13075901
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 555  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||| ||||||||    
T  13076015 ttatttttcaactttgaggtgaagtttgttaggcatcaagcgaacatggctgctcataccatt-ctagggcggcatgttcatagcctagtccccatgttt 13075917  T
Q  556 ttgagatttgtcctcc 571  Q
    ||||||||||||||||    
T  13075916 ttgagatttgtcctcc 13075901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 456 - 524
Target Start/End: Complemental strand, 23756454 - 23756386
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagg 524  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  23756454 ttatttttcaactttgaagtgaagtttgtcaggcgtcaagcgaacatgactgctcatacgattgttagg 23756386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 464 - 571
Target Start/End: Complemental strand, 323881 - 323774
Alignment:
Q  464 caactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagatt 563  Q
    ||||||||| ||||||||||| || |||||| | ||||| ||| || |||||||||||| |||  ||| ||||| |||||||||| ||||||||||||||    
T  323881 caactttgaagtgaagtttgttagacgtcaatcaaacatagctactaatacgattgctaaggccgcatattcttggcctagtcgctatgtttttgagatt 323782  T
Q  564 tgtcctcc 571  Q
    ||| ||||    
T  323781 tgttctcc 323774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 546
Target Start/End: Original strand, 5609545 - 5609630
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| ||||||||| | ||||||    
T  5609545 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatacattagctagggcggcatgttcttgggctagtc 5609630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 464 - 546
Target Start/End: Original strand, 4395367 - 4395449
Alignment:
Q  464 caactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    ||||||||||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | ||||||| | ||||||    
T  4395367 caactttgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 4395449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 557
Target Start/End: Original strand, 24538697 - 24538789
Alignment:
Q  465 aactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttttt 557  Q
    ||||||||||||||||| || |||   ||||||||||||  |||||||||  |||||||| | |||||||||| | |||||| |||| |||||    
T  24538697 aactttgaggtgaagttcgttaggaaacaagcgaacatgattgctcatacttttgctaggacaacatgttcttcggctagtcaccatattttt 24538789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 537
Target Start/End: Original strand, 51113521 - 51113597
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 537  Q
    ||||||||| |||||||||||||| ||| |  |||||||||||| ||||||||   | ||||||||||| |||||||    
T  51113521 ttccaacttcgaggtgaagtttgttaggagagaagcgaacatggttgctcatagcttagctagggcgacctgttctt 51113597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 44527459 - 44527512
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    |||||||||  ||||||||||| | ||| | |||||||||||||||||||||||    
T  44527459 ttccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatac 44527512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 44602958 - 44603011
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    ||||||||| |||||||||||||| ||| | |||||||||||||  ||||||||    
T  44602958 ttccaacttcgaggtgaagtttgttaggggacaagcgaacatggtggctcatac 44603011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 48949705 - 48949653
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| | ||||||    
T  48949705 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttactcata 48949653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 456 - 571
Target Start/End: Original strand, 18720840 - 18720955
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 555  Q
    |||| |||||||||||||||||||||||| |||| ||||| | |||||| ||||||||||||||||| |||| ||||||||| ||||| |||||||||||    
T  18720840 ttatcttccaactttgaggtgaagtttgttaggcatcaagtgcacatggttgctcatacgattgctatggcggcatgttcttggcctaatcgccatgttt 18720939  T
Q  556 ttgagatttgtcctcc 571  Q
    ||||||||||||||||    
T  18720940 ttgagatttgtcctcc 18720955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 461 - 571
Target Start/End: Complemental strand, 49525175 - 49525065
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgag 560  Q
    |||||| |||||||| |||||||| ||||| |||||||||||||||||||| ||  |||||||||||   ||||||| | |||||| |||| ||||||||    
T  49525175 ttccaattttgaggtaaagtttgttaggcgacaagcgaacatggctgctcacacccttgctagggcggtctgttcttggactagtcaccatatttttgag 49525076  T
Q  561 atttgtcctcc 571  Q
    |||||||||||    
T  49525075 atttgtcctcc 49525065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 546
Target Start/End: Complemental strand, 34497353 - 34497268
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||   | ||||||||| | ||||||| | ||||||    
T  34497353 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagctagggcggcctgttcttgggctagtc 34497268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 55199717 - 55199769
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||    
T  55199717 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcata 55199769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 527
Target Start/End: Original strand, 26046898 - 26046960
Alignment:
Q  465 aactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 527  Q
    ||||||||||||| |||||| ||| | ||||||||||||| |||||||||  | |||||||||    
T  26046898 aactttgaggtgacgtttgttaggagacaagcgaacatggttgctcatactttagctagggcg 26046960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 42340258 - 42340208
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctca 511  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||    
T  42340258 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctca 42340208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 53497238 - 53497291
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    |||||||||  ||||||||||| | ||| | |||||||||||||||||||||||    
T  53497238 ttccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatac 53497291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 27608884 - 27608832
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    ||||||||| ||| |||||||||| ||| | ||||||||||||| ||||||||    
T  27608884 ttccaacttcgagctgaagtttgttaggagacaagcgaacatggttgctcata 27608832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 456 - 571
Target Start/End: Original strand, 32378146 - 32378260
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 555  Q
    ||||||| ||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||| | || ||||||||| |||||||||||||||||    
T  32378146 ttatttttcaactttgaggtgaagtttgttagaa-tcaagcgaacatggctgctcatacgattgctatgacggcatgttcttggcctagtcgccatgttt 32378244  T
Q  556 ttgagatttgtcctcc 571  Q
    ||||||||| ||||||    
T  32378245 ttgagatttttcctcc 32378260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 546
Target Start/End: Original strand, 23075038 - 23075123
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    |||||||||| ||||||||||||| ||| | ||||||||||||| ||||||||   | |||||| |||||||||||| | ||||||    
T  23075038 ttccaactttaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggacgacatgttcttgggctagtc 23075123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 546
Target Start/End: Complemental strand, 22767254 - 22767169
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    ||||||||| |||||||||||||| ||| | ||| ||||||||| |||||||||  | |||| |||| ||||||||| | ||||||    
T  22767254 ttccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctaaggcggcatgttcttgggctagtc 22767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 26597438 - 26597386
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||    
T  26597438 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcata 26597386  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 537
Target Start/End: Complemental strand, 27532887 - 27532811
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 537  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| | || ||||  | ||||||| |||||||||||    
T  27532887 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttacttatactttagctagggtgacatgttctt 27532811  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 546
Target Start/End: Original strand, 4268305 - 4268390
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    |||||||||  ||||||||||| | ||| | ||||||||||||| |||||||||  |  |||||||| ||||||||| | ||||||    
T  4268305 ttccaacttcaaggtgaagtttattaggagacaagcgaacatggttgctcatactttatctagggcggcatgttcttgggctagtc 4268390  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 20205161 - 20205214
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    |||||||||  ||||||||||||| ||| | ||||||||||||| |||||||||    
T  20205161 ttccaacttctaggtgaagtttgttaggagacaagcgaacatggttgctcatac 20205214  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 546
Target Start/End: Original strand, 25731014 - 25731099
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    |||||||||  ||||||||||||| ||| |  |||||||||||| |||||||||  | ||||||||| | ||||||| | ||||||    
T  25731014 ttccaacttccaggtgaagtttgttaggagataagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 25731099  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 546
Target Start/End: Original strand, 27292640 - 27292724
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 546  Q
    |||||||||  | ||||||||| ||||| | ||||||||||||| |||||||||  | ||||||| ||||||||||| | ||||||    
T  27292640 ttccaacttcaaagtgaagtttatcaggagacaagcgaacatggttgctcatactttagctaggg-gacatgttcttgggctagtc 27292724  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 8388292 - 8388344
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    ||||||||| |||| ||||||||| ||| | ||||||||||||| ||||||||    
T  8388292 ttccaacttcgaggggaagtttgttaggagacaagcgaacatggttgctcata 8388344  T

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Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 458 - 571
Target Start/End: Original strand, 22534501 - 22534614
Alignment:
Q  458 attttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttttt 557  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||| ||| ||||| ||  | |||||||||||||    
T  22534501 atttttcaactttgaggtgaagtttgtcaggcatcaagcgaacatggatgttcatacgattgttagggcggcattttcttggctcaatcgccatgttttt 22534600  T
Q  558 gagatttgtcctcc 571  Q
    ||||||||||||||    
T  22534601 gagatttgtcctcc 22534614  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 477 - 571
Target Start/End: Original strand, 5542589 - 5542683
Alignment:
Q  477 aagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagatttgtcctcc 571  Q
    |||||||  ||||| ||||||||||||| |||||||||  ||||||||||| ||| ||||| | |||||| ||||||||||||||||||||||||    
T  5542589 aagtttgctaggcgacaagcgaacatggttgctcatacacttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctcc 5542683  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 567
Target Start/End: Original strand, 33792019 - 33792130
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 555  Q
    ||||||||||||||||||||| ||||| | | ||||||| | ||||||| || ||||||||||| |||||||  ||||||||  |||| ||  |||||||    
T  33792019 ttattttccaactttgaggtgcagtttattaagcgtcaaacaaacatggttgttcatacgattgttagggcggtatgttcttgacctaatcatcatgttt 33792118  T
Q  556 ttgagatttgtc 567  Q
    || |||| ||||    
T  33792119 tttagatgtgtc 33792130  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 514
Target Start/End: Complemental strand, 11731650 - 11731597
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||    
T  11731650 ttccaacttcgaggtgaagtttgttaggaggcaagcgaacatggttgctcatac 11731597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 503
Target Start/End: Original strand, 3100452 - 3100494
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatg 503  Q
    |||||||||||||||||||||||| ||| | ||||||||||||    
T  3100452 ttccaactttgaggtgaagtttgttaggagacaagcgaacatg 3100494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 27443141 - 27443191
Alignment:
Q  463 ccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    |||||||||||||||||||||| ||| |  |||||||||||| ||||||||    
T  27443141 ccaactttgaggtgaagtttgttaggagagaagcgaacatggttgctcata 27443191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 14680368 - 14680421
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    ||||||||| |||||||||||||| ||| | || |||||||||| |||||||||    
T  14680368 ttccaacttcgaggtgaagtttgttaggagacatgcgaacatggttgctcatac 14680421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 456 - 565
Target Start/End: Original strand, 25538098 - 25538207
Alignment:
Q  456 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 555  Q
    ||||||||||||| ||||||||| ||||| ||||||| ||||||||||| ||||||||| | | ||| |||| ||||||||| |||||||||||||||||    
T  25538098 ttattttccaactctgaggtgaaatttgttaggcgtctagcgaacatggatgctcatacaaattctaaggcggcatgttcttggcctagtcgccatgttt 25538197  T
Q  556 ttgagatttg 565  Q
    ||||||||||    
T  25538198 ttgagatttg 25538207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 537
Target Start/End: Complemental strand, 34695885 - 34695809
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 537  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | |||||||    
T  34695885 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcttgttctt 34695809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 537
Target Start/End: Complemental strand, 34718297 - 34718221
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 537  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | |||||||    
T  34718297 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcttgttctt 34718221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 9710161 - 9710214
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||    
T  9710161 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatac 9710214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 534
Target Start/End: Complemental strand, 13109850 - 13109777
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgtt 534  Q
    ||||||| |||||||||||||||||||| | ||| ||||||| | || ||||||  | ||||||||||||||||    
T  13109850 ttccaacgttgaggtgaagtttgtcaggagacaaacgaacatagttgttcatactttagctagggcgacatgtt 13109777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Complemental strand, 12130619 - 12130566
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 514  Q
    ||||||||| |||||||||||||| | | | ||||||||||||| |||||||||    
T  12130619 ttccaacttcgaggtgaagtttgttatgagacaagcgaacatggttgctcatac 12130566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 463 - 571
Target Start/End: Original strand, 13329 - 13435
Alignment:
Q  463 ccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagat 562  Q
    ||||||||||||| |||||||| || || |||||||||||||||||||  ||  ||||||||||| | ||||||| | |||||| || ||| ||||||||    
T  13329 ccaactttgaggtaaagtttgttagacgacaagcgaacatggctgctc--actcttgctagggcggcctgttcttgggctagtcaccgtgtctttgagat 13426  T
Q  563 ttgtcctcc 571  Q
    |||||||||    
T  13427 ttgtcctcc 13435  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 44220 - 44170
Alignment:
Q  463 ccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    |||||||||||||||||||||| ||| |  |||||||||||| ||||||||    
T  44220 ccaactttgaggtgaagtttgttaggagagaagcgaacatggttgctcata 44170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 396 - 448
Alignment:
Q  461 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 513  Q
    ||||||||| ||| |||||||||| ||| | ||||||||||||| ||||||||    
T  396 ttccaacttcgagatgaagtttgttaggagacaagcgaacatggttgctcata 448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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