View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_high_22 (Length: 263)
Name: NF1867_high_22
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 30030145 - 30029924
Alignment:
| Q |
20 |
aataaaaaggatgttatgaaacattaccatcttgaggatcagtaatagaaaagatgagatgaatttgagcccataagaataacaaaaagagaaacacact |
119 |
Q |
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| T |
30030145 |
aataaaaaggatgttatgaaacattaccatcttgaggatcagtaatagaaaagatgagatgaatttgagcccataagaataacaaaaagagaaacacact |
30030046 |
T |
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| Q |
120 |
ttgtatttccatgttagaaatagttctcaatcaacttcttgacaatttgctgattatattatatggcactcagacaaaaatacttgtctgaag------- |
212 |
Q |
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| T |
30030045 |
ttgtatttccatgttagaaatagttctcaatcaacttcttgacaatttgctgatt-----atatggcactcaggcaaaaatacttgtctcaagcaaagaa |
30029951 |
T |
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| Q |
213 |
aggatattatgcattgcatgtaacatg |
239 |
Q |
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||||||||||||||||||||||||||| |
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| T |
30029950 |
aggatattatgcattgcatgtaacatg |
30029924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 30040332 - 30040104
Alignment:
| Q |
20 |
aataaaaaggatgttatgaaacattaccatcttgaggatcagtaatagaaaagatgagatgaatttgagcccataagaataacaaaaagagaaacacact |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30040332 |
aataaaaaggatgttatgaaacattaccatcttgaggatcagtaattgaaaagatgagatgaatttgagcccataagaataacaaaaagagaaacacact |
30040233 |
T |
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| Q |
120 |
ttgtatttccatgttagaaatagttctcaatcaacttcttgacaatttgctgattatattatatggcactcagacaaaaatacttgtctgaag------- |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| |
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| T |
30040232 |
ttgtattttcatgttagaaatagttctcaatcaacttcttgacaatttgctgatt-----atatggcactcagacaaaaatacttgcctcaagcaaagaa |
30040138 |
T |
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| Q |
213 |
aggatattatgcattgcatgtaacatgtaacatg |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30040137 |
aggatattatgcattgcatgtaacatgtaacatg |
30040104 |
T |
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Back To:
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