View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_high_27 (Length: 240)
Name: NF1867_high_27
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_high_27 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 47075255 - 47075035
Alignment:
| Q |
20 |
gctttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaagactgaagttaaagacaacaatttaaa |
119 |
Q |
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| T |
47075255 |
gctttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaagactgaagttaaagacaacaatttaaa |
47075156 |
T |
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| Q |
120 |
tccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaacatgtctgatgttacatcatattcat |
219 |
Q |
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| T |
47075155 |
tccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaacatgtctgatgttacatcatattcat |
47075056 |
T |
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| Q |
220 |
atatagattactctgacattt |
240 |
Q |
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||||||||||||||||||||| |
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| T |
47075055 |
atatagattactctgacattt |
47075035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 47057452 - 47057258
Alignment:
| Q |
22 |
tttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaagactgaagttaaagacaac-aatttaaat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
47057452 |
tttttcttgtaggatccttttctaaggatatcaagaatggttgagagtggaggttctgttcctatttgcaagactgaagttatagacaacaaatttaaat |
47057353 |
T |
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| Q |
121 |
ccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaacatgtctgatgttacatcatat |
215 |
Q |
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| T |
47057352 |
ccaaaatggaaaccagtttgtcttaatttccagcagtttggaagtatagtaagcttgcgatctttgaacacaacatgtctaatgttaaatcatat |
47057258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 18230146 - 18230364
Alignment:
| Q |
22 |
tttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaagactgaagttaaagacaacaatttaaatc |
121 |
Q |
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||||||||| ||||||||||||||||||||||| || | |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
18230146 |
tttttcttgcaggatccttttctaaggatatcacgagtggttgagagtggaggaactgttcctattttcaagactgaagttatagacaacaatttaaatc |
18230245 |
T |
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| Q |
122 |
caaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaacatgtctgatgttacatcatattcatat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||| ||||||||||| |
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| T |
18230246 |
caaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttcgatctttgtgcacaacatgtccgatgttacaccatattcatat |
18230345 |
T |
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| Q |
222 |
atagattactctgacattt |
240 |
Q |
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||||||||||||||||||| |
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| T |
18230346 |
atagattactctgacattt |
18230364 |
T |
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Back To:
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