View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_high_31 (Length: 235)
Name: NF1867_high_31
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 27489323 - 27489522
Alignment:
| Q |
18 |
attatagaagtctatattataaatattaattatgaatttgttatataaagaatgacaccaacataacacataaaaaggtgtaaacaataaacnnnnnnn- |
116 |
Q |
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| T |
27489323 |
attatagaagtgtatattataaatattaattatgaattttttatataaagcatgacaccaacataacacataaaaaggtgtaaacaatatactttttttt |
27489422 |
T |
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| Q |
117 |
caaggtcaattcttttcttctcatggtagttaatttttggtgtaaaattttcattaaataagaaatgaaacatagaaaggtaacataagactatgcgtgt |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27489423 |
caaggtcaattcttttcttctcatggtagtcaatttttggtgtaaaattttcattaaataagaaatgaaacatagaaaggtaacataagactatgcgtgt |
27489522 |
T |
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