View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_high_5 (Length: 507)
Name: NF1867_high_5
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Original strand, 37203875 - 37204357
Alignment:
| Q |
17 |
cttctcgaccgacgaacattcatcctcctattgtgcctaggattaaagaagttgtatggcggcctcctttaaatcattggattaaatgcaacatttatgg |
116 |
Q |
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| T |
37203875 |
cttctcgaccgacgaacattcatcctcctattgtgcctaggattaaagaagttttatggcggcctcctttaaatgattggattaaatgcaacatttatgg |
37203974 |
T |
|
| Q |
117 |
tgctacaaatagatgatgtcctagttcttatgcatgtggtgccattttcagagacaacaaggctaatgcctggggtgcttctctgttaatatagatatct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37203975 |
tgctacaaatagatgatgtcctagttcttatgcatgtggtgccattttcagagacaaccaggctaatgcctggggtgcttctctgttaatatagatatct |
37204074 |
T |
|
| Q |
217 |
ccattcctctcaatgctgagattacttgtgtcatgaatgctattgaattggtttttcagaaagattggatggatgcatttatggattgagtctaattcac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37204075 |
ccattcctctcaatgctgagattacttgtgtcatgaatgctattgaattggtttttcagaaagattggatggatgcatttatggattgagtctaattcac |
37204174 |
T |
|
| Q |
317 |
aactcattgttcaagcatacaagaattatagccgttgggttaatgcatccaacttagatatatgaacttta-nnnnnnnactctttaaagagggcgatca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37204175 |
aactcattgttcaagcatacaagaattatagccgttgggttaatgcatccaacttagatatatgaactttattttttttactctttaaagagggcgatca |
37204274 |
T |
|
| Q |
416 |
tttgtgctaatttaatggctctgctctaaaagtgcattttaatggtctccattcgtggaatcaagttactgctagtatctctg |
498 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| |
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| T |
37204275 |
tttgtgctaacttaatggctctgctctaaaagtgcattttaatggtctgcattggtggaatcaagtcactgctagtatctctg |
37204357 |
T |
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