View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_high_8 (Length: 448)
Name: NF1867_high_8
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 30041079 - 30040713
Alignment:
| Q |
13 |
aatatctccacttaattcacccttcaggcccatggttgacaatctcctatattttttatgtaaatgacaaagtagaattttttaaattagtaggttggaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30041079 |
aatatctccacttaattcacccttcaggcccatggttgacaatctcctatattttttatgtaaatgacaaagtagaattttttaaattagtaggttggaa |
30040980 |
T |
|
| Q |
113 |
aagtgtgattaaaagggtgataaaattaatataccaaagttaacaaggaataataatgttcaatttatatatattacaatgaagtaacccttgatttatt |
212 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30040979 |
aagtgtgagtaaaagggtgataaaattaatataccaaagttaacaaggaataataatgttcaatttatatatattacaatgaagtaacccttgatttatt |
30040880 |
T |
|
| Q |
213 |
gcaggttactccttcccaaggtgctccacaagggtcatctgatttgtcccagctgggtggtgtatcttgccatgcatcttttagagacataagtacggta |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30040879 |
gcagattactccttcccaaggtgctccacaagggtcatctgatttgtcccagctgggtggtgtatcttgccatgcatcttttagagacataagtacggta |
30040780 |
T |
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| Q |
313 |
actgcaacagtatataaacattataaaaaatgcattaactagtagtaacttacgtcatatttggata |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30040779 |
actgcaacagtatataaacattataaaaaatgcattaaccggtagtaacttacgtcatatttggata |
30040713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 30030611 - 30030298
Alignment:
| Q |
13 |
aatatctccacttaattcacccttcaggcccatggttgacaatctcctatattttttatgtaaatgacaaagtagaattttttaaattagtaggttggaa |
112 |
Q |
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||||||||||||||||| ||||||||||||||||||||| | || ||||||||||| ||| | |||||||| || ||| |||||||||||| |||||| |
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| T |
30030611 |
aatatctccacttaatttacccttcaggcccatggttgatagtcccctatatttttcatgcacatgacaaaatatt-tttcttaaattagtag-ttggaa |
30030514 |
T |
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| Q |
113 |
aagtgtgattaaaagggtgataaaattaatataccaaagttaacaaggaataataatgttcaattta-tatatattacaatgaagtaacccttgatttat |
211 |
Q |
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||||| | ||||| | |||| ||||||||||||||||||| | ||||| ||||||||| |||| | ||| |||||||||||||||||||| ||||| | |
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| T |
30030513 |
aagtg--aataaaaagatgatgaaattaatataccaaagttcaaaaggatcaataatgttgaattgaatatttattacaatgaagtaaccctagatttgt |
30030416 |
T |
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| Q |
212 |
tgcaggttactccttcccaaggtgctccacaagggtcatctgatttgtcccagctgggtggtgtatcttgccatgcatcttttagagacataagtacggt |
311 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| || |||| |||||||||||| |||| | | |
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| T |
30030415 |
tgcaggtcactccttcccatggtgctccacaagggtcatctgatttatcccagctaggtggtgtattttcccatatatcttttagagatctaagggcagc |
30030316 |
T |
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| Q |
312 |
aactgcaacagtatataa |
329 |
Q |
| |
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|||||||||||| ||||| |
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| T |
30030315 |
aactgcaacagtgtataa |
30030298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 51390763 - 51390827
Alignment:
| Q |
373 |
ttggatattagacttgtttttattttagatggatataagtttgttgtgtaactagagctgatgat |
437 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51390763 |
ttggatattagacttgtttttattttagatggatataagtttgttgtgtaactagagctgatgat |
51390827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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