View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1867_low_10 (Length: 389)

Name: NF1867_low_10
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1867_low_10
NF1867_low_10
[»] chr1 (22 HSPs)
chr1 (1-270)||(52629849-52630118)
chr1 (270-357)||(38894755-38894842)
chr1 (272-354)||(46626327-46626409)
chr1 (270-354)||(19322347-19322431)
chr1 (270-357)||(33075656-33075743)
chr1 (270-357)||(22198907-22198994)
chr1 (270-354)||(29844884-29844968)
chr1 (270-338)||(29188319-29188387)
chr1 (270-338)||(33359700-33359768)
chr1 (270-357)||(1826793-1826880)
chr1 (286-356)||(10766202-10766272)
chr1 (270-356)||(42678374-42678460)
chr1 (270-338)||(1367291-1367359)
chr1 (270-338)||(47134704-47134772)
chr1 (272-354)||(19400733-19400815)
chr1 (301-351)||(28570756-28570806)
chr1 (270-338)||(4890098-4890166)
chr1 (270-338)||(17364622-17364690)
chr1 (292-338)||(5426238-5426284)
chr1 (270-336)||(52306069-52306135)
chr1 (301-354)||(50557858-50557910)
chr1 (270-338)||(16300389-16300457)
[»] chr8 (18 HSPs)
chr8 (270-354)||(36776404-36776488)
chr8 (270-354)||(24053914-24053998)
chr8 (279-357)||(40587692-40587770)
chr8 (286-354)||(25346050-25346118)
chr8 (276-354)||(9472158-9472235)
chr8 (272-346)||(45434992-45435066)
chr8 (301-357)||(8760732-8760788)
chr8 (301-357)||(25836265-25836321)
chr8 (301-357)||(1942820-1942876)
chr8 (291-354)||(41972977-41973040)
chr8 (303-357)||(32844182-32844236)
chr8 (272-354)||(40616097-40616179)
chr8 (286-354)||(42245735-42245803)
chr8 (301-351)||(8162781-8162831)
chr8 (300-354)||(44389008-44389062)
chr8 (175-220)||(2623252-2623297)
chr8 (175-219)||(13231853-13231897)
chr8 (270-338)||(18378821-18378889)
[»] chr4 (28 HSPs)
chr4 (270-354)||(3757726-3757810)
chr4 (270-354)||(50119960-50120044)
chr4 (270-354)||(51347488-51347572)
chr4 (272-354)||(13171627-13171709)
chr4 (270-354)||(20588562-20588646)
chr4 (270-354)||(36743204-36743288)
chr4 (275-354)||(24547336-24547415)
chr4 (270-357)||(24948286-24948373)
chr4 (270-357)||(43021892-43021979)
chr4 (301-357)||(8956947-8957003)
chr4 (301-357)||(8986919-8986975)
chr4 (286-354)||(30529281-30529349)
chr4 (301-357)||(37349817-37349873)
chr4 (301-357)||(50033712-50033767)
chr4 (286-357)||(29712386-29712457)
chr4 (270-357)||(39406231-39406318)
chr4 (270-356)||(53991552-53991638)
chr4 (286-357)||(578604-578675)
chr4 (270-354)||(17730433-17730517)
chr4 (270-356)||(35716299-35716385)
chr4 (269-338)||(35498551-35498620)
chr4 (270-338)||(3821217-3821285)
chr4 (270-338)||(39716736-39716804)
chr4 (301-351)||(9888895-9888945)
chr4 (276-354)||(16895991-16896069)
chr4 (300-338)||(5752481-5752519)
chr4 (175-219)||(12007921-12007965)
chr4 (270-338)||(12682774-12682842)
[»] chr5 (15 HSPs)
chr5 (270-351)||(36886974-36887055)
chr5 (270-354)||(17643388-17643472)
chr5 (284-354)||(30754423-30754493)
chr5 (301-357)||(6305449-6305505)
chr5 (301-357)||(43138546-43138602)
chr5 (270-356)||(12592469-12592555)
chr5 (270-338)||(3088050-3088118)
chr5 (270-338)||(25698736-25698804)
chr5 (270-338)||(30140502-30140570)
chr5 (270-338)||(41689275-41689343)
chr5 (306-354)||(42977835-42977883)
chr5 (301-351)||(754450-754500)
chr5 (300-354)||(12422347-12422401)
chr5 (270-338)||(33709832-33709900)
chr5 (270-325)||(26602200-26602255)
[»] chr3 (15 HSPs)
chr3 (270-354)||(29530564-29530648)
chr3 (275-357)||(35855209-35855291)
chr3 (272-354)||(26102153-26102235)
chr3 (270-354)||(8528106-8528190)
chr3 (272-357)||(11955525-11955610)
chr3 (286-354)||(19368944-19369012)
chr3 (291-338)||(19895664-19895711)
chr3 (272-354)||(28981820-28981902)
chr3 (272-338)||(9563228-9563294)
chr3 (270-350)||(22473644-22473724)
chr3 (270-338)||(8393563-8393631)
chr3 (292-335)||(22519211-22519254)
chr3 (300-338)||(18682519-18682557)
chr3 (272-354)||(40831929-40832011)
chr3 (286-338)||(55297362-55297414)
[»] chr7 (18 HSPs)
chr7 (270-357)||(44804520-44804607)
chr7 (270-357)||(29467751-29467838)
chr7 (275-354)||(34872174-34872253)
chr7 (270-356)||(3791479-3791565)
chr7 (286-354)||(35156998-35157066)
chr7 (286-338)||(11840466-11840518)
chr7 (286-338)||(21600989-21601041)
chr7 (301-357)||(24684633-24684689)
chr7 (270-338)||(39276613-39276681)
chr7 (275-354)||(29684116-29684195)
chr7 (272-338)||(17169026-17169092)
chr7 (270-338)||(39651167-39651235)
chr7 (270-316)||(7857049-7857095)
chr7 (270-338)||(688063-688131)
chr7 (270-338)||(21670811-21670879)
chr7 (300-338)||(9143506-9143544)
chr7 (270-338)||(49146141-49146210)
chr7 (270-338)||(48529952-48530020)
[»] chr2 (13 HSPs)
chr2 (270-354)||(10876574-10876656)
chr2 (272-357)||(17836969-17837054)
chr2 (281-354)||(19486200-19486273)
chr2 (270-357)||(32677183-32677270)
chr2 (272-356)||(9920910-9920994)
chr2 (299-354)||(19486114-19486169)
chr2 (279-354)||(42781020-42781095)
chr2 (270-338)||(4292801-4292869)
chr2 (270-338)||(28607221-28607289)
chr2 (271-338)||(9545794-9545861)
chr2 (272-338)||(2952759-2952825)
chr2 (270-336)||(10050210-10050276)
chr2 (286-337)||(18096507-18096558)
[»] chr6 (10 HSPs)
chr6 (270-354)||(9737755-9737839)
chr6 (272-357)||(4897494-4897579)
chr6 (270-338)||(1218518-1218586)
chr6 (270-338)||(15045565-15045633)
chr6 (270-338)||(6969314-6969382)
chr6 (270-338)||(18323835-18323903)
chr6 (270-338)||(24443927-24443995)
chr6 (290-338)||(9981278-9981326)
chr6 (270-354)||(33328280-33328364)
chr6 (270-354)||(35133174-35133257)
[»] scaffold0009 (2 HSPs)
scaffold0009 (270-357)||(225435-225522)
scaffold0009 (272-354)||(108549-108631)
[»] scaffold0385 (1 HSPs)
scaffold0385 (286-356)||(8301-8371)
[»] scaffold0069 (1 HSPs)
scaffold0069 (270-338)||(11773-11841)
[»] scaffold0057 (1 HSPs)
scaffold0057 (270-338)||(20598-20666)
[»] scaffold0381 (1 HSPs)
scaffold0381 (301-351)||(9600-9650)
[»] scaffold0759 (1 HSPs)
scaffold0759 (301-338)||(5910-5947)
[»] scaffold0051 (1 HSPs)
scaffold0051 (270-338)||(62062-62130)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 52629849 - 52630118
Alignment:
Q  1 ctcagttattccaaaggttttgtgcatataaaatatttgggtcaataatcattgtccggtgctagatttgatttccttgattaatcaatttaagttatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |    
T  52629849 ctcagttattccaaaggttttgtgcatataaaatatttgggtcaataatcattgtccggtgctagatgtgatttccttgattaatcaacttaagttatgt 52629948  T
Q  101 ccattttcacattattaacataaggtaccttgttaaggaaattactctgacctcccttaagttttccttcattaacactcacaccccatttaattttaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52629949 ccattttcacattattaacataaggtaccttgttaaggaaattacactgacctcccttaagttttccttaattaacactcacaccccatttaattttaaa 52630048  T
Q  201 atttacactaacctcccttgtttatttaacaaactcagacaaacctccctcgaattatagcactcttact 270  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||    
T  52630049 atttacactaacctcccttgtttatttaacaaacccacacaaacctccctcgaatcataacactcttact 52630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 38894755 - 38894842
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  38894755 tctatatactaataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 38894842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 46626409 - 46626327
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  46626409 tatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 46626327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 19322431 - 19322347
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||||| ||||| ||||||||||||  ||||||||||||||    
T  19322431 tctatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggtt 19322347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 33075743 - 33075656
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  33075743 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 33075656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 22198994 - 22198907
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||| |||  ||||||||||||  ||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  22198994 tctatatacttatattaaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttaag 22198907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 29844968 - 29844884
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||| |||  ||||||||||||   || |||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  29844968 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29844884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 29188387 - 29188319
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| ||||||||||||||    
T  29188387 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggt 29188319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 33359700 - 33359768
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| ||||||||||||||    
T  33359700 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggt 33359768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 1826793 - 1826880
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||| |||  ||||| ||||||  ||||||||||||||||| |  ||||| |||||||||||| ||||| ||||||||||||    
T  1826793 tctatatacttatattaaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaatctatttattggttaag 1826880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 10766202 - 10766272
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaa 356  Q
    ||||||||||||   || |||||||||||||||| ||||| || ||||||||| |||||||||||||||||    
T  10766202 aaaagaaatgtcctatggatttaccattttgcccctataagggtcaatttggtaatctacttattggttaa 10766272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 42678374 - 42678460
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaa 356  Q
    |||||||||| |||  ||||||||||||   |||||||||||||||  || ||||| |||||||||| | |||||||||||||||||    
T  42678374 tctatatacttatataaaaagaaatgtcccatgaatttaccattttatccctataaggggcaatttgataatctacttattggttaa 42678460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 1367291 - 1367359
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| | ||||||||||||    
T  1367291 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggt 1367359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 47134704 - 47134772
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||| | |||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  47134704 tctatatacttatataaaaggtaatgtccattgaatttaccattttgcccctataaggggcaatttggt 47134772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 19400733 - 19400815
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||   |||||  |||||||||||||||||||| ||||| ||| |||| ||| ||||| | |||||||    
T  19400733 tatatactaataagaaaatccatgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggtt 19400815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 28570756 - 28570806
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattg 351  Q
    ||||||||||||||||||| ||||| || ||||||||| ||||||||||||    
T  28570756 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 28570806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 4890098 - 4890166
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||  ||| | ||||||||||||    
T  4890098 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggt 4890166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 17364690 - 17364622
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||| ||  |||||||||||||||||||| ||| | ||||||||||||    
T  17364690 tctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggt 17364622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 5426238 - 5426284
Alignment:
Q  292 aatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||| ||||| |||||||||||||||||| || ||||||||||||    
T  5426238 aatgtccattgattttaccattttgcccttagaaggggcaatttggt 5426284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 336
Target Start/End: Original strand, 52306069 - 52306135
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttg 336  Q
    |||||||||| |||  ||||||||| ||  || ||||||||||||||||| ||||| ||||||||||    
T  52306069 tctatatacttatataaaaagaaatatccctttaatttaccattttgcccctataaggggcaatttg 52306135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 50557858 - 50557910
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||||||| ||| |||| |||||||||||| ||||||| |||||||    
T  50557858 tgaatttaccattttgtcct-ataaggggcaatttggtaatctactaattggtt 50557910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 16300389 - 16300457
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||  ||||||  |||||||||||||||||| | ||||| ||||||||||||    
T  16300389 tctatatacttatattaaaattaatgtcccttgaatttaccattttgctcctataaggggcaatttggt 16300457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 36776404 - 36776488
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  36776404 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 36776488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 24053914 - 24053998
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| | ||||| |||||||||||| |||||||||||||||    
T  24053914 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggtt 24053998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 40587770 - 40587692
Alignment:
Q  279 taataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  40587770 taataagaaaataaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 40587692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 25346050 - 25346118
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||| ||||||||||||||||||||  ||||| |||||||||||| |||||||||||||||    
T  25346050 aaaagaaatgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 25346118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 9472158 - 9472235
Alignment:
Q  276 tactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||  ||||| |||||||||||||  ||| |||||||||||||| |||||||||||||||    
T  9472158 tactaataagaaaagaaatgtcccttgaaattaccattttgcctctat-aagggcaatttggtaatctacttattggtt 9472235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 45434992 - 45435066
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctact 346  Q
    ||||||||||||||||||   |||||  |||||||||||||||||||||||||| |||||||||||| |||||||    
T  45434992 tatatactaataagaaaatccatgtcacttgaatttaccattttgcccttataaggggcaatttggtaatctact 45435066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 8760732 - 8760788
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  8760732 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 8760788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 25836321 - 25836265
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  25836321 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 25836265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 1942820 - 1942876
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||    
T  1942820 tgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttaag 1942876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 41972977 - 41973040
Alignment:
Q  291 aaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||  |||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||    
T  41972977 aaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggtt 41973040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 32844182 - 32844236
Alignment:
Q  303 aatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||||||||||  |||| |||||||||||| ||||||||||||||||||    
T  32844182 aatttaccattttgccccgataaggggcaatttggtaatctacttattggttaag 32844236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 40616179 - 40616097
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||   |||||  |||||||||||||||||| | |||||  ||||||||||| ||||||| |||||||    
T  40616179 tatatactaataagaaaatccatgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggtt 40616097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 42245803 - 42245735
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||  ||||||| |||||||||||| ||||| ||| |||||| | |||||||||||||||    
T  42245803 aaaagaaatgtcacttgaattcaccattttgcccctataaggggtaatttgataatctacttattggtt 42245735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 8162831 - 8162781
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattg 351  Q
    ||||||||||||||||||| ||||| || ||||||||| ||||||||||||    
T  8162831 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 8162781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 44389062 - 44389008
Alignment:
Q  300 ttgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||||||| ||||||||| ||| |||||||| ||||| | |||||||    
T  44389062 ttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggtt 44389008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 2623297 - 2623252
Alignment:
Q  175 acactcacaccccatttaattttaaaatttacactaacctcccttg 220  Q
    ||||| ||| ||||| ||||||||||| ||||||||||||||||||    
T  2623297 acactgacatcccatctaattttaaaacttacactaacctcccttg 2623252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 13231897 - 13231853
Alignment:
Q  175 acactcacaccccatttaattttaaaatttacactaacctccctt 219  Q
    ||||| ||||||| | ||||||||||| |||||||||||||||||    
T  13231897 acactgacaccccctctaattttaaaacttacactaacctccctt 13231853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 18378889 - 18378821
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  ||||||||| |||||||||  ||| | ||||||||||||    
T  18378889 tctatatacttatattaaaagaaatgtcctttgaatttatcattttgcctctattaggggcaatttggt 18378821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 3757726 - 3757810
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  3757726 tctatatactaataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 3757810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 50120044 - 50119960
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  50120044 tctatatactaataagaaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 50119960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 51347488 - 51347572
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||| ||||| |||||||||    
T  51347488 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 51347572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 13171627 - 13171709
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||||||||| |||||||  |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  13171627 tatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 13171709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 20588562 - 20588646
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||||  ||||| |||||||||||| ||| |||||||||||    
T  20588562 tctatatactaataagaaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggtt 20588646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 36743288 - 36743204
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||||  || |||||||||||||| |  ||||| |||||||||||| |||||||||||||||    
T  36743288 tctatatactaataagaaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggtt 36743204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 24547336 - 24547415
Alignment:
Q  275 atactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||||||||||||||  ||||||||||||||||| || ||||| |||||||||||| ||||| |||||||||    
T  24547336 atactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggtt 24547415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 24948373 - 24948286
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||| | ||||| |||||||||||  ||||||||||||||||||    
T  24948373 tctatatacttatataaaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggttaag 24948286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 43021892 - 43021979
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||||||||||||||||||||   ||||||||||||| |||||  ||| | | |||||||||| ||||||||||||||||||    
T  43021892 tctatatactaataagaaaagaaatgttccttgaatttaccatcttgcctctattaggtgcaatttggtaatctacttattggttaag 43021979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 8956947 - 8957003
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  8956947 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 8957003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 8986919 - 8986975
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  8986919 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 8986975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 30529349 - 30529281
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||| ||  |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  30529349 aaaagaaatatcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 30529281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 37349817 - 37349873
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  37349817 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 37349873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 50033712 - 50033767
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  50033712 tgaatttaccattttgcccttataa-gggcaatttggtaatctacttattggttaag 50033767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 29712386 - 29712457
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||  || ||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||    
T  29712386 aaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggttaag 29712457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 39406318 - 39406231
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||| |||  |||||||||||   ||||||||||||||| |||| ||||| ||| |||||||| ||||||||||||||||||    
T  39406318 tctatatacttatataaaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaatctacttattggttaag 39406231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 53991638 - 53991552
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaa 356  Q
    |||||||||| |||  |||||||||||    || |||||||||||||||| ||||| |||||||||||| |||||||||||||||||    
T  53991638 tctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggttaa 53991552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 578675 - 578604
Alignment:
Q  286 aaaagaaatgtct-attgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||| ||||| ||||||||||||||| ||||| || ||||||||| ||||||||||||||||||    
T  578675 aaaagaaatgtctcattga-tttaccattttgcccctataagggacaatttggtaatctacttattggttaag 578604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 17730433 - 17730517
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||| ||||| | |||||||||||   |||||||||||||||||| | ||||| |||||||||||| ||||||| |||||||    
T  17730433 tctatatgctaatcaaaaaagaaatgtgctttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggtt 17730517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 35716385 - 35716299
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaa 356  Q
    |||||||||| |||  |||||||||||    || |||||||||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  35716385 tctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttattagttaa 35716299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 35498620 - 35498551
Alignment:
Q  269 ctctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||||||||  |||||||||| |  ||||||||| |||||||||| |||||||| |||||||||    
T  35498620 ctctatatactaatataaaaagaaatggcccttgaatttatcattttgcccctataaaggacaatttggt 35498551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 3821285 - 3821217
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||| ||||||  |||||||||||||||||||| ||||| ||||||||||||    
T  3821285 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggt 3821217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 39716804 - 39716736
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| | ||||||||||||    
T  39716804 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggt 39716736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 9888945 - 9888895
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattg 351  Q
    ||||||||||||||||||| ||||| || ||||||||| ||||||||||||    
T  9888945 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9888895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 16895991 - 16896069
Alignment:
Q  276 tactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||   |||||  |||||||||| ||||||||||||||| |||| ||||||| ||||| | |||||||    
T  16895991 tactaataagaaaatccatgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggtt 16896069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 5752481 - 5752519
Alignment:
Q  300 ttgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  5752481 ttgaatttaccattttgcccctataaggggcaatttggt 5752519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 12007965 - 12007921
Alignment:
Q  175 acactcacaccccatttaattttaaaatttacactaacctccctt 219  Q
    ||||| ||||||| | ||||||||||| |||||||||||||||||    
T  12007965 acactgacaccccctctaattttaaaacttacactaacctccctt 12007921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 12682842 - 12682774
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||||||||||  |||   |||||| ||||| ||||||||||||||| ||| | ||||||||||||    
T  12682842 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggt 12682774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 36887055 - 36886974
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattg 351  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  36887055 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattg 36886974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 17643472 - 17643388
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||||||||||| |||||||  ||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||    
T  17643472 tctatatactaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaatctatttattggtt 17643388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 30754423 - 30754493
Alignment:
Q  284 agaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||  |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  30754423 agaaaagaaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 30754493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 6305505 - 6305449
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  6305505 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 6305449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 43138602 - 43138546
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  43138602 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 43138546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 12592555 - 12592469
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaa 356  Q
    |||||||||| |||  ||||||||||||   ||||||||||| ||| ||| ||||| |||||||||||| |||||||||||||||||    
T  12592555 tctatatacttatataaaaagaaatgtcccatgaatttaccagtttacccctataaggggcaatttggtaatctacttattggttaa 12592469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 3088118 - 3088050
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||| ||||||  |||||||||||||||||||| ||||| ||||||||||||    
T  3088118 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggt 3088050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 25698804 - 25698736
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| | ||||||||||||    
T  25698804 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggt 25698736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 30140502 - 30140570
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| ||||| ||||||||    
T  30140502 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggtaatttggt 30140570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 41689275 - 41689343
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| | ||||||||||||    
T  41689275 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattatgggcaatttggt 41689343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 42977883 - 42977835
Alignment:
Q  306 ttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  42977883 ttaccattttgcccctataaggggcaatttggtaatctacttattggtt 42977835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 754500 - 754450
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattg 351  Q
    ||||||||||||||||||| ||||| || ||||||||| ||||||||||||    
T  754500 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 754450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 12422401 - 12422347
Alignment:
Q  300 ttgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||| ||||||||||||||| ||||| |||||||||||| ||||||| |||||||    
T  12422401 ttgattttaccattttgcccctataaggggcaatttggtaatctactaattggtt 12422347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 33709900 - 33709832
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||  ||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  33709900 tctatatacttatattaaaattaatgtcccttgaatttaccattttacccctataaagggcaatttggt 33709832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 26602255 - 26602200
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataa 325  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||| |||||||||    
T  26602255 tctatatacttatataaaaagaaatgtcccttgaatttaccattttacccttataa 26602200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 29530648 - 29530564
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| || ||||| |||||||||||| |||||||||||||||    
T  29530648 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggtt 29530564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 357
Target Start/End: Original strand, 35855209 - 35855291
Alignment:
Q  275 atactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||||||||||||||||  || ||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||    
T  35855209 atactaataagaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggttaag 35855291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 26102235 - 26102153
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| |||||  || |||||||| |||| ||||||||||    
T  26102235 tatatactaataagaaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggtt 26102153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 8528190 - 8528106
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||||  |||||||||||||| || || ||||| |||||||||||| || || |||||||||    
T  8528190 tctatatactaataagaaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaatatatttattggtt 8528106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 11955610 - 11955525
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||| |||  ||||||||||||   || |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  11955610 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 11955525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 19369012 - 19368944
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||  |||| ||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  19369012 aaaagaaatgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 19368944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 19895711 - 19895664
Alignment:
Q  291 aaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19895711 aaatgtccattgaatttaccattttgcccttataaagggcaatttggt 19895664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 28981902 - 28981820
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||   |||||  |||||||||||||||||||| ||||| |||||||||||| ||| ||| |||||||    
T  28981902 tatatactaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 28981820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 9563228 - 9563294
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||||||||  |||||| ||||||||| ||||||||||||||||| || |||||||| ||||||    
T  9563228 tatatactaatataaaaagagatgtctattaaatttaccattttgcccatagaaagggcattttggt 9563294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 22473644 - 22473724
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttatt 350  Q
    |||||||||| |||  |||||||||||    || |||||||||||||||| ||||| |||||||||||| |||||||||||    
T  22473644 tctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttatt 22473724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 8393563 - 8393631
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||||||||||  |||   ||||||  |||||||||||||||||||| ||||| ||||||||||||    
T  8393563 tctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggt 8393631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 22519211 - 22519254
Alignment:
Q  292 aatgtctattgaatttaccattttgcccttataaagggcaattt 335  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||    
T  22519211 aatgtccattgaatttaccattttgcccctataaggggcaattt 22519254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 18682519 - 18682557
Alignment:
Q  300 ttgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  18682519 ttgaatttaccattttgcccctataaggggcaatttggt 18682557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 40832011 - 40831929
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||| ||||||||||||   |||||  |||||||||||||||||| | ||||| || ||||| ||| ||||||| |||||||    
T  40832011 tatatcctaataagaaaatccatgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggtt 40831929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 55297414 - 55297362
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||||||||  | |||||||||||||| ||| ||||||||| ||||||||    
T  55297414 aaaagaaatgtccctcgaatttaccattttacccctataaagggtaatttggt 55297362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 44804520 - 44804607
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| || ||||| |||||||||||| ||||| ||||||||||||    
T  44804520 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttaag 44804607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 29467751 - 29467838
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  29467751 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 29467838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 34872174 - 34872253
Alignment:
Q  275 atactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||| ||||||||||||||||  ||||| ||||||||||| || ||||| |||||||||||| |||||||||||||||    
T  34872174 atactagtaagaaaagaaatgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggtt 34872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 3791479 - 3791565
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaa 356  Q
    |||||||||| |||  ||||||||||||   || |||||||||||||||| ||||| |||||||||||| |||||||||||||||||    
T  3791479 tctatatacttatattaaaagaaatgtcctatggatttaccattttgcccctataaggggcaatttggtaatctacttattggttaa 3791565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 35157066 - 35156998
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||  |||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||    
T  35157066 aaaagaaatgtcacttgaatttaccattttgcccctataaggggcaatttggtaatctacttatcggtt 35156998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 11840518 - 11840466
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  11840518 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggt 11840466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 21601041 - 21600989
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  21601041 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggt 21600989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 24684689 - 24684633
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||    
T  24684689 tgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttaag 24684633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 39276613 - 39276681
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||||||||| ||||||||    
T  39276613 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggt 39276681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 29684195 - 29684116
Alignment:
Q  275 atactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||  |||||||||||   |||||||||||||||| ||| ||||| |||||||||||| ||||||| |||||||    
T  29684195 atactaatataaaaagaaatgtgccttgaatttaccattttacccctataaggggcaatttggtaatctactaattggtt 29684116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 17169026 - 17169092
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||| |||  ||||||||||||  |||||||||||||||||||| ||| ||||||||||||||    
T  17169026 tatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggt 17169092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 39651235 - 39651167
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| | ||||||||||||    
T  39651235 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggt 39651167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 7857095 - 7857049
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttg 316  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||||    
T  7857095 tctatatactaataagaaaagaaatgtcccttgaatttaccgttttg 7857049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 688063 - 688131
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||||||||||  |||   ||||||  |||||||||||||||||||| ||||| ||||||||||||    
T  688063 tctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggt 688131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 21670879 - 21670811
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||| ||||||||| ||||||||  ||||||||    
T  21670879 tctatatacttatattaaaagaaatgtcccttgaatttactattttgcccctataaaggataatttggt 21670811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 9143506 - 9143544
Alignment:
Q  300 ttgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  9143506 ttgaatttaccattttgcccctataaggggcaatttggt 9143544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 49146210 - 49146141
Alignment:
Q  270 tctatatactaataagaaaaga-aatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||||||||||  |||||  |||||| ||||| ||||||||||||||| ||| | ||||||||||||    
T  49146210 tctatatactaatataaaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggt 49146141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 48530020 - 48529952
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  ||||| |||||||||||||| |||   ||||||||||||    
T  48530020 tctatatacttatattaaaagaaatgtcctttgaaattaccattttgcccctattgggggcaatttggt 48529952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 10876656 - 10876574
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||   ||| |||||||||||| |||||||||||||||    
T  10876656 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgccc--ctaaggggcaatttggtaatctacttattggtt 10876574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 17836969 - 17837054
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||| |||  ||||||||||||  |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  17836969 tatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 17837054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 19486200 - 19486273
Alignment:
Q  281 ataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  19486200 ataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 19486273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 32677270 - 32677183
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||| |||  |||| |||||||  |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  32677270 tctatatacttatattaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 32677183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 9920994 - 9920910
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaa 356  Q
    |||||||| |||  ||||||||||||   || |||||||||||||||| ||||| |||||||||||| |||||||||||||||||    
T  9920994 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggttaa 9920910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 19486169 - 19486114
Alignment:
Q  299 attgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||    
T  19486169 attgaatttatcattttgcccctataaggggcaatttggtaatctacttattggtt 19486114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 42781020 - 42781095
Alignment:
Q  279 taataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    |||||||||||||||||||  ||||||||| ||||||| || | ||| |||||||||||| ||||| |||||||||    
T  42781020 taataagaaaagaaatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaatctatttattggtt 42781095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 4292869 - 4292801
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||| | ||| ||||||||||||||    
T  4292869 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgctcctattaagggcaatttggt 4292801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 28607221 - 28607289
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  |||| ||||||| |||||||||||||||||| || ||||| ||||||||||||    
T  28607221 tctatatacttatattaaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggt 28607289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 9545861 - 9545794
Alignment:
Q  271 ctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| | ||||||||||||    
T  9545861 ctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggt 9545794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 2952759 - 2952825
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||| |||  ||||||||||||  |||||||||||||||||||| ||| | ||||||||||||    
T  2952759 tatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggt 2952825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 10050276 - 10050210
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttg 336  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| | ||||||||||    
T  10050276 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttg 10050210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 18096507 - 18096558
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttgg 337  Q
    ||||||||||||  |||||||||||||||||||| ||||| ||| |||||||    
T  18096507 aaaagaaatgtcctttgaatttaccattttgcccctataaggggtaatttgg 18096558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 9737839 - 9737755
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| || ||||| |||||||||| | ||||| |||||||||    
T  9737839 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggtt 9737755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 4897579 - 4897494
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||| |||  ||||||||||||  |||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||    
T  4897579 tatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggttaag 4897494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 1218518 - 1218586
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| ||||||||||||||    
T  1218518 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggt 1218586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 15045633 - 15045565
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||||||||| ||||||||    
T  15045633 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggt 15045565  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 6969382 - 6969314
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||||||||||  |||   ||||||  |||||||||||||||||||| ||||| ||||||||||||    
T  6969382 tctatatactaatataaaagttaatgtcccttgaatttaccattttgcccctataaggggcaatttggt 6969314  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 18323835 - 18323903
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| ||  ||||||||||    
T  18323835 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaaaagcaatttggt 18323903  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 24443927 - 24443995
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||| ||  |||||||||||||||||||| ||| | ||||||||||||    
T  24443927 tctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggt 24443995  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 9981326 - 9981278
Alignment:
Q  290 gaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||  ||||||||||||||||| ||| ||||| ||||||||||||    
T  9981326 gaaatgttcattgaatttaccattttacccctataaggggcaatttggt 9981278  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 33328364 - 33328280
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||| ||||||||||   |||||  || ||||||||||||||| | || || ||||||||||||  |||||| |||||||    
T  33328364 tctatatacaaataagaaaatccatgtcctttaaatttaccattttgctcctacaaggggcaatttggtagtctactaattggtt 33328280  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 35133174 - 35133257
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||| ||||||||||   |||||  || ||||||||||||||||  ||| |||||||||||| | ||||||| |||||||    
T  35133174 tctatatacaaataagaaaatccatgtcctttaaatttaccattttgcctctat-aagggcaatttgataatctactaattggtt 35133257  T

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Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 225435 - 225522
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaag 357  Q
    |||||||||| |||  |||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |  |||| ||||||||||    
T  225435 tctatatacttatattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttaag 225522  T

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Target: scaffold0009; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 108549 - 108631
Alignment:
Q  272 tatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggtt 354  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||  |||| ||| |||||||| |||||| ||||||||    
T  108549 tatatactaataagaaaagaaatgtcccttgaatttaccattttgtccccataaggggtaatttggtaatctacgtattggtt 108631  T

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Target: scaffold0385 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 8371 - 8301
Alignment:
Q  286 aaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggtgatctacttattggttaa 356  Q
    ||||||||||||   ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||    
T  8371 aaaagaaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaa 8301  T

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Target: scaffold0069 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 11773 - 11841
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  ||||||||||||||||||| |||| | ||||||||||||    
T  11773 tctatatacttatattaaaagaaatgtcatttgaatttaccattttgcctttattaggggcaatttggt 11841  T

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Target: scaffold0057 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 20666 - 20598
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    |||||||||| |||  ||||||||||||  |||||||||||||||||||| ||| | ||||||||||||    
T  20666 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggt 20598  T

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Target: scaffold0381 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 9600 - 9650
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggtgatctacttattg 351  Q
    ||||||||||||||||||| ||||| || ||||||||| ||||||||||||    
T  9600 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9650  T

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Target: scaffold0759 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 5947 - 5910
Alignment:
Q  301 tgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  5947 tgaatttaccattttgcccctataaggggcaatttggt 5910  T

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Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 62062 - 62130
Alignment:
Q  270 tctatatactaataagaaaagaaatgtctattgaatttaccattttgcccttataaagggcaatttggt 338  Q
    ||||||||||||||  |||   |||||| ||||| ||||||||||||||| ||| | ||||||||||||    
T  62062 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggt 62130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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