View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_11 (Length: 389)
Name: NF1867_low_11
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 31952135 - 31952499
Alignment:
| Q |
8 |
ttctatgaccaacttgtgtaatataatattttctacatattgtgatgatgctgattggaatttatgtttgtcagaattttatgcatgaagtttcacgtgc |
107 |
Q |
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| T |
31952135 |
ttctatgaccaacttgtgtaatataatattttctacatattgtgatgatgctgattggaatttatgtttgtcagaattttatgcatgaagtttcacgtgc |
31952234 |
T |
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| Q |
108 |
actgatcatttatccagaatatagatattaaatgttgcaactcatctttgcatagaagtaaatgtcccatcatgatccagatgagggcccgtcaatcaca |
207 |
Q |
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| T |
31952235 |
actgatcatttatccataatatagatattcaatgttgcaactcatctttgcatggaagtacatgtcccatcataatccatatgagggcccgtcagtcaca |
31952334 |
T |
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| Q |
208 |
gagtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaaatggtttggg |
306 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31952335 |
gagtggagagtccaacgatgggaatcatcttcccagcatgttgtcatccatccaatatttggaagttttcatggaaatcctgatattcaaatggtttggg |
31952434 |
T |
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| Q |
307 |
agtccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatcgt |
371 |
Q |
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| T |
31952435 |
agtccaaagtggacattagtattccggcaacaaacgataagtcaaaagagatccatttcaatcgt |
31952499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 369
Target Start/End: Complemental strand, 31950456 - 31950096
Alignment:
| Q |
12 |
atgaccaacttgtgtaatataatattttctacatattgtgatgatgctgattggaatttatgtttgtcagaattttatgcatgaagtttcacgtgc--ac |
109 |
Q |
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| T |
31950456 |
atgaccaacttgtgcaatataatatcttttacatattgtgatgatgttgattgtgatttatgtttgtcagaattttatgcctgaagtttcacctgcgcac |
31950357 |
T |
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| Q |
110 |
tgatcatttatccagaatatagatattaaatgttgcaactcatctttgcatagaagtaaatgtcccatcatgatccagatgagggcccgtcaatcacaga |
209 |
Q |
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| T |
31950356 |
tgatcatttatccataaaatagatactaaatgttgcaactcatctttgcagggaagtacatgtcccctcatgatccatacgagggcccgtcaatcatagg |
31950257 |
T |
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| Q |
210 |
gtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaaatggtttgggag |
308 |
Q |
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| T |
31950256 |
gtggagagtccaatgatgggaatcatctttccaacatgttgtcctccatccaatatttggaagttttcatggaaagcctcctatgtgaatggtttaggag |
31950157 |
T |
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| Q |
309 |
tccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatc |
369 |
Q |
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| T |
31950156 |
tccaaagtggacattagtattccggcaacacatgataagtcaaaaaggatccatttcaatc |
31950096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 84 - 369
Target Start/End: Complemental strand, 3497924 - 3497638
Alignment:
| Q |
84 |
ttttatgcatgaagtttcacgtgcactgatcatttatccagaatatagatattaaatgttgcaactcatctttgcatagaagtaaatgtcccatcatgat |
183 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||| ||||||| ||||||| |
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| T |
3497924 |
ttttatgcctgaagtttcacgcgcactgatcatttatccagaaaatagatactaaaagttgcaactcatctttgcagggaagtacatgtcccctcatgat |
3497825 |
T |
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| Q |
184 |
ccagatgagggcccgtcaatcacagagtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaa |
282 |
Q |
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||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||||| | |||||| |
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| T |
3497824 |
ccagatgagagcctgtcaatcacagggtggagagtccaacgatgggaatcatctttccagcctgttgtcctcaatccaatatttggaagtatggatggaa |
3497725 |
T |
|
| Q |
283 |
atcttgatattcaaatggtttgggagtccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatc |
369 |
Q |
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| T |
3497724 |
atcctcctatgcgtacggtttgggagtccaaagtggacattagtataccagcaacagacgataagtcaaaagggatccatttcaatc |
3497638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 338
Target Start/End: Original strand, 43236805 - 43236946
Alignment:
| Q |
198 |
gtcaatcacagagtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaa |
296 |
Q |
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||||||| ||| ||||||| |||||| | | ||||||| |||||||| |||||||||||||||||| ||| |||||||||| | ||| | | ||| | | |
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| T |
43236805 |
gtcaatctcagggtggagaatccaacaatgagaatcatttttccagcttgttgtcctccatccaatattttgaagttttcacgtaaagcctcctatgcga |
43236904 |
T |
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| Q |
297 |
atggtttgggagtccaaagtggacattagtatttcgacaaca |
338 |
Q |
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| T |
43236905 |
acggtttgggggtccaaagtggacattagcattccggcaaca |
43236946 |
T |
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