View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_13 (Length: 367)
Name: NF1867_low_13
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 46617475 - 46617155
Alignment:
| Q |
15 |
aataacgttataattctggttaaaggacaccagctgcaaagaaatatagtaaaacaaaaccagataactaaagagtcaaatcatgccttaagaagaaatt |
114 |
Q |
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| T |
46617475 |
aataacgttataattctggttaaaggacaccatctgcaaagaaatatagtaaaacaaaaccagataactaaagagtcaaatcatgccttaagaagaaatt |
46617376 |
T |
|
| Q |
115 |
tataaaggaaatgtagattagataacatcatcaagagcatacttaaagtatcagttgtgacgaggcataaaagtaaagcagtgttactcatcacccattc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46617375 |
tataaaggaaatgtagattagataacatcatcaagagcatacttaaagtatcagttgtgacgaggcataaaagtaaagcagtgttactcatcaaccattc |
46617276 |
T |
|
| Q |
215 |
atattaaccatgccactggtttttgaaagcatcattctacttaatgaaagaatttagattttaaagctatgagtatccaactatccctgtggaattgtta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
46617275 |
atattaaccatgccactggtttttgaaagcatcattctacttaatgaaagaatttagatttcaaaactatgagtatccaactatccctgtggaattgtta |
46617176 |
T |
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| Q |
315 |
ctttgttttctaaatggttac |
335 |
Q |
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||||||||||||||||||||| |
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| T |
46617175 |
ctttgttttctaaatggttac |
46617155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 46636166 - 46635843
Alignment:
| Q |
22 |
ttataattctggttaaaggacaccagctgcaaagaaatatagtaaaacaaaaccagataactaaagagtcaaatcatgccttaagaagaaat-ttataaa |
120 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||| | ||||| | ||||||||||||| ||||||| |
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| T |
46636166 |
ttataattctggttaaaggacaccatctgccaagaaatataggaaaacaaaaccagataattaaagactaaaatcgcggcttaagaagaaatgttataaa |
46636067 |
T |
|
| Q |
121 |
ggaaatgtagattagataacatcatcaagagcatacttaaagtatcagttgtgacgaggcataaaagtaaagcagtgttactc--------atcacccat |
212 |
Q |
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| T |
46636066 |
ggaaatgtagattagattacatcatcaagagcatactttaagtatcaattataacaaggcataaaagtaatatagtgttactcaccaaccaaccaaccat |
46635967 |
T |
|
| Q |
213 |
tcatat-taaccatgccactggtttttgaaagcatcattctacttaatgaaagaatttagattttaaagctatgagtatccaactatccctgtggaattg |
311 |
Q |
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|||||| || | | |||||||||||||||||||||||| | | |||| ||||||||||||||| ||| |||| ||||| |||| ||| | |||||||| |
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| T |
46635966 |
tcatatgtaccaaagccactggtttttgaaagcatcatacaagttaacaaaagaatttagatttgaaaactataagtatgaaactctccgtatggaattg |
46635867 |
T |
|
| Q |
312 |
ttactttgttttctaaatggttac |
335 |
Q |
| |
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|||| ||||||| ||||||||||| |
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| T |
46635866 |
ttacattgttttgtaaatggttac |
46635843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 46644176 - 46644339
Alignment:
| Q |
27 |
attctggttaaaggacaccagctgcaaagaaatatagtaaaacaaaaccagataactaaagagtcaaatcatgccttaagaagaaat-ttataaaggaaa |
125 |
Q |
| |
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|||||| | ||||||||||| |||| |||||| |||| |||||||| ||||||||||||| | |||||| ||| ||||||||||||| |||||||||||| |
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| T |
46644176 |
attctgctcaaaggacaccatctgccaagaaaaataggaaaacaaa-ccagataactaaacactcaaatgatggcttaagaagaaatgttataaaggaaa |
46644274 |
T |
|
| Q |
126 |
tgtagattagataacatcatcaagagcatacttaaagtatcagttgtgacgaggcataaaagtaa |
190 |
Q |
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| T |
46644275 |
tgtagattagataacatcatcaagaacatacttcaagcttgagttgtaaccaagcataaaagtaa |
46644339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 46628840 - 46628788
Alignment:
| Q |
22 |
ttataattctggttaaaggacaccagctgcaaagaaatatagtaaaacaaaac |
74 |
Q |
| |
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||||||||||| |||||| |||||| |||| |||||| |||| |||||||||| |
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|
| T |
46628840 |
ttataattctgcttaaagaacaccatctgccaagaaaaataggaaaacaaaac |
46628788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 18376273 - 18376378
Alignment:
| Q |
53 |
aagaaatatagtaaaacaaaaccagataactaaagagtcaaatcatgccttaagaagaaatttataaaggaaatgtagattagataacatcatcaagagc |
152 |
Q |
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|||||| |||| ||||||||||||||||| |||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18376273 |
aagaaaaataggaaaacaaaaccagataattaaacactcaaatcatggcttaagacgaaatttataaaggaaatgtagattagataacatcatctagagc |
18376372 |
T |
|
| Q |
153 |
atactt |
158 |
Q |
| |
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|||||| |
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| T |
18376373 |
atactt |
18376378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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