View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_14 (Length: 366)
Name: NF1867_low_14
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 82 - 359
Target Start/End: Complemental strand, 50733091 - 50732814
Alignment:
| Q |
82 |
cagctggttcagtaattaatttttatgaaaaagattataaaggacttttggatactcgtattgatatgaagtcaactatttccgtattttctccctctaa |
181 |
Q |
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| T |
50733091 |
cagctggttcagtaattaatttttatgaaaaagattataaaggacttgtggatactcgtattgatatgaagtcaactatttctgtattttctccctctaa |
50732992 |
T |
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| Q |
182 |
ctgaaatccttctcccacatcttcttttaaattgaacattgatgcatctgaataggagctatagttagagactcataaaattttattttagcggatgcta |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50732991 |
ctgaaatccttctcccacatcttcttttaaattgaacattgatgcatctgaataggagctatagttagagactcataaaattttattttagcggatgctg |
50732892 |
T |
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| Q |
282 |
tatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50732891 |
tatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatg |
50732814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 82 - 359
Target Start/End: Original strand, 50779764 - 50780041
Alignment:
| Q |
82 |
cagctggttcagtaattaatttttatgaaaaagattataaaggacttttggatactcgtattgatatgaagtcaactatttccgtattttctccctctaa |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50779764 |
cagctggttcagtaattaatttttatgaaaaagattataaaggacttgtggatactcgtattgatatgaagtcaactatttctgtattttctccctctaa |
50779863 |
T |
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| Q |
182 |
ctgaaatccttctcccacatcttcttttaaattgaacattgatgcatctgaataggagctatagttagagactcataaaattttattttagcggatgcta |
281 |
Q |
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| T |
50779864 |
ctgaaatccttctcccacatcttcttttaaattgaacattgatgcatctgaataggagctatagttagagactcataaaattttattttagcggatgctg |
50779963 |
T |
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| Q |
282 |
tatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50779964 |
tatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatg |
50780041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 37120655 - 37120727
Alignment:
| Q |
287 |
aactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatg |
359 |
Q |
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| T |
37120655 |
aactttgaggcacttcctgatgctaccattgttgaagctcttggactttggttggcaattcaatttgcctatg |
37120727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 262 - 359
Target Start/End: Complemental strand, 18927564 - 18927467
Alignment:
| Q |
262 |
ttttattttagcggatgctatatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatg |
359 |
Q |
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||||| ||||| || |||| ||| |||||||||||||||| ||||| || |||||||||||||| ||||||| ||| |||||||||||| |||||| |
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| T |
18927564 |
ttttagtttagtggctgcttcatggaactttgaggcacttcctgatgctaccattgttgaagctcttagatttaggttggcaattcaattttcctatg |
18927467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 45338784 - 45338854
Alignment:
| Q |
289 |
ctttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatg |
359 |
Q |
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||||||||| |||| ||| | |||||||| |||||||| | ||||| |||| ||||||||||||||||||| |
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| T |
45338784 |
ctttgaggcgcttcctgaagctaacattgctgaagctcttggatttcagttggcaattcaatttgcctatg |
45338854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 26195312 - 26195195
Alignment:
| Q |
112 |
aagattataaaggacttttggatactcgtattgatatgaagtcaactatttccgtattttctccctctaactgaaatccttctcccacatcttcttttaa |
211 |
Q |
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||||||| ||||||||| || |||||| | ||||| || || ||||||| || ||| ||||||||| | || | |||| ||||||| ||| |||| | |
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| T |
26195312 |
aagattacaaaggacttgtgaatactcatgttgatgtggagccaactatctctatatcttctccctcaagttggagtcctcctcccacgtctactttcag |
26195213 |
T |
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| Q |
212 |
attgaacattgatgcatc |
229 |
Q |
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|||||||||||||||||| |
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| T |
26195212 |
attgaacattgatgcatc |
26195195 |
T |
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