View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_15 (Length: 333)
Name: NF1867_low_15
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 30209503 - 30209197
Alignment:
| Q |
11 |
agaatataggctgcaaatttttgtggtttggtgttggtgtggccaagtgatggatatgtcatttgtgtgctttaactttaacccagtactccnnnnnnna |
110 |
Q |
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| T |
30209503 |
agaatataggctgcaaatttttgtgctttggtgttggtgtggccaagtgatggatatgtcatttgtgtgctttaactttaacccagtactccttttttta |
30209404 |
T |
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| Q |
111 |
ggttcttggctttattccaaggactaacctctctttaagcaaagaatgcttgcaatagagtaacagtcataaaattatggtttaaatatgtgccaaggca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30209403 |
ggttcttggctttattccaaggactaacctctctttaagcaaagaatgcttgtaatagagtaacagtgataaaattatggtttaaatatgtgccaaggca |
30209304 |
T |
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| Q |
211 |
tttgtctaatttgcataagttagttttgttactatgtaagtttgttttatgcatctcattttatccaatatgttgggttataaggggttctaattatcat |
310 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30209303 |
tttgtctaatttgcataagttagttttgttgctatgtaagtttgttttatgcatctcattttatccaatatgttgggttataaggggttctagttatcat |
30209204 |
T |
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| Q |
311 |
tcacctt |
317 |
Q |
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|| |||| |
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| T |
30209203 |
tcccctt |
30209197 |
T |
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