View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_16 (Length: 332)
Name: NF1867_low_16
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 77 - 326
Target Start/End: Original strand, 44083695 - 44083943
Alignment:
| Q |
77 |
aatagcttagtttgaaacaaattaaatcttatccattttgagagaaaagattagtggaacaaattatacgcacgatcaaaatcaacaagagtgggagcca |
176 |
Q |
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| T |
44083695 |
aatagcttagtttgaaacaaattaaatcttatccattttgagagaaaagattagtggaacaaattacacgcacgatcaaaatcaacaagagtgggagcca |
44083794 |
T |
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| Q |
177 |
acgttagtatgaaagcatcatgccattatccaatccaattgttattaatttagttgattaatgtctttaaaagccattannnnnnngacaaatgcaaagg |
276 |
Q |
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| T |
44083795 |
acgtttgtatgaaagcattatgccattatccaat-caattgttattaatttagttgattaatgtctttaaaagccattatttttttgacaaatgcaaagg |
44083893 |
T |
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| Q |
277 |
ccatcattaaaattgttttattgcatttgcatccgtcactttcttctcac |
326 |
Q |
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| T |
44083894 |
ccatcattaaaattgttttattgcatttgcatccgtcactttcttctcac |
44083943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 54 - 249
Target Start/End: Complemental strand, 44096173 - 44095974
Alignment:
| Q |
54 |
gaagttcctaacaagattcccataatagcttagtttgaaacaaattaaatcttatccattttgagagaaaag----attagtggaacaaattatacgcac |
149 |
Q |
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| T |
44096173 |
gaagatcctaacaagattcccataatagcttagtttgaaaaaaagtaaatcttgtccattttgtgagagaagattaattagtggaagaaactatacgtac |
44096074 |
T |
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| Q |
150 |
gatcaaaatcaacaagagtgggagccaacgttagtatgaaagcatcatgccattatccaatccaattgttattaatttagttgattaatgtctttaaaag |
249 |
Q |
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| T |
44096073 |
gatcgtaatcaactagagtgggagccaacgtttgtgtcataacattaagccactatccaatccaattgttattaatttagttgattaatgtctctaaaag |
44095974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 44082209 - 44082269
Alignment:
| Q |
16 |
attaccaaggttttgggaatacaggtgggtaaatttgagaagttcctaacaagattcccat |
76 |
Q |
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| T |
44082209 |
attaccaaggttttgggaatataggtgggtaaatttgagaagttcctaacaagattcccat |
44082269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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