View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_17 (Length: 324)
Name: NF1867_low_17
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 33881920 - 33882218
Alignment:
| Q |
17 |
aaaaacttgttgtttgactttcattgaacttccttagatcaaaagtttttgacttttaattttgagtttctttggttttattgttcttagcaggtcatca |
116 |
Q |
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| T |
33881920 |
aaaaacttgttgtttgactttcattgaacttccttagatcaaa-gcttttgacttttaattttgagtttctttggttttattgttcttagcaggtcatca |
33882018 |
T |
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| Q |
117 |
ctatggttgatgctgttgttggtatagtaattgaggaactattgaattcagttattaaaatgaaagacagagctgagaagttcaaaccaactctagaacg |
216 |
Q |
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| T |
33882019 |
ctatggttgatgctgttgttggtatagtaattgaggaactattgaattcagttattgaaatgaaagacagagctgtgaagttcaaaccaactctagaacg |
33882118 |
T |
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| Q |
217 |
cttaaaagaaactctcgaatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttggaccgatcacctaatgaaacgaagagaataatc |
316 |
Q |
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| T |
33882119 |
cttagaagaaactctcgaatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttgaaccgatcacctaatgaaacaaagagaataatc |
33882218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 33866111 - 33866386
Alignment:
| Q |
29 |
tttgactttcattgaacttccttagatcaaaagttttt-gacttttaattttgagtttctttggttttattgttcttagcaggtcatcactatggtt--- |
124 |
Q |
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||||||||||||||| |||||||||||||||| ||||| | || ||||||||| || |||| ||| |||||||| | || |||| |||||||| |
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| T |
33866111 |
tttgactttcattgaccttccttagatcaaaatttttttgtctattaattttg---ttttttgttttatttgttcttggtagatcatggctatggttcta |
33866207 |
T |
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| Q |
125 |
gatgctgttgttggtatagtaattgaggaactattgaattcagttattaaaatgaaagacagagctgagaagttcaaaccaactctagaacgcttaaaag |
224 |
Q |
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| T |
33866208 |
gatgctgttgttgggaaattagttgaagaactaatgagttcagttgttgacatgaagaacaaagctttgaagttcaaaccaactctagatagattagaag |
33866307 |
T |
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| Q |
225 |
aaactctcgaatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttggaccgatcacctaatgaaac |
303 |
Q |
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|| || ||||||||| |||||||||||||||||||||||||||||| ||||| ||||| | ||||| |||||||| |
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| T |
33866308 |
ctacacttcaatcattaggaccattgatcaatcaaatagatgaactcaagaagaaattggatcattcacccaatgaaac |
33866386 |
T |
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