View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1867_low_18 (Length: 319)
Name: NF1867_low_18
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 7569059 - 7568761
Alignment:
| Q |
1 |
agcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7569059 |
agcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatac |
7568960 |
T |
|
| Q |
101 |
ctgcaattatcaaatcaaagatatgatatattcaagaatccaaaattattattgttatactatatatatgattatcaatcaagaatataagccggaccag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7568959 |
ctgcaattatcaaatcaaagatatgatatattcaagaatccaaaattattattgttatactatatatatgattattaatcaagaatataagccggaccag |
7568860 |
T |
|
| Q |
201 |
caaggtctagcgcaattagttgatgagcagtgtcggtgtgagtgttgtaaattctgaagtatcgagttcatattcctaacgataaaaaagcatactaat |
299 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7568859 |
caaggtctagcgcaattagctgatgagcagtgtcggtgtgagtgttgtaaattctggagtatcgagttcatattcctaccgataaaaaagcatactaat |
7568761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 33126286 - 33126392
Alignment:
| Q |
1 |
agcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatac |
100 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||| ||||| || ||||||||| |
|
|
| T |
33126286 |
agcaaagcaagatcataatctataagtggcatgtctagtgttgggtgtctaagcctcagattgtaatacacagttgacccagctgctcctgtaatcatac |
33126385 |
T |
|
| Q |
101 |
ctgcaat |
107 |
Q |
| |
|
||||||| |
|
|
| T |
33126386 |
ctgcaat |
33126392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 50748539 - 50748443
Alignment:
| Q |
7 |
gccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatacctg |
103 |
Q |
| |
|
||||||||||| || |||| ||||||||| | ||| || | ||| ||||| | |||||||| |||||||| | ||||||||||| |||||||||| |
|
|
| T |
50748539 |
gccaaatcatagtcaataattggcatgtccaatgtaggatgtctcagcctaaggttgtagtagacagttgacagagctgcacccatgatcatacctg |
50748443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University