View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_20 (Length: 267)
Name: NF1867_low_20
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 30209979 - 30209720
Alignment:
| Q |
14 |
atattgcacgagtgaattgaagtagtactaagtaaggtattgattcacaaaaatccaaaccaaaactgaaattgaaatttcaattaaaggaatatctttc |
113 |
Q |
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| T |
30209979 |
atattgcacgagtgaattgaagtagtactaagtaaggtattgattcacaaaaatccaaaccaaaactgaaattgaaatttcaattaaaggaataactttc |
30209880 |
T |
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| Q |
114 |
atttttatcaaaagaaacaaatactatatatatagaaaggttctcacatgaagcaaaagtctctttggctcagttgatacatcatgtatgaatgcatgta |
213 |
Q |
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| T |
30209879 |
aattttatcaaaagaaacaaatactatatatatagaaaggttctcacatgaagcaaaagtccctttggctcagttgatacatcatgtatgaatgcatgta |
30209780 |
T |
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| Q |
214 |
acgt------acgtaataataatgtaatatttcttatatttatatttttgatggaataat |
267 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30209779 |
acgtaacgtaacgtaataataatgtaatatttcttatatttatatttttgatggaataat |
30209720 |
T |
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