View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1867_low_27 (Length: 243)

Name: NF1867_low_27
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1867_low_27
NF1867_low_27
[»] chr5 (2 HSPs)
chr5 (17-233)||(4102314-4102528)
chr5 (61-144)||(37314446-37314526)
[»] chr8 (2 HSPs)
chr8 (61-141)||(36258761-36258838)
chr8 (62-106)||(1087235-1087279)
[»] chr1 (5 HSPs)
chr1 (62-102)||(46595233-46595273)
chr1 (61-106)||(2730428-2730473)
chr1 (61-102)||(28215997-28216038)
chr1 (61-102)||(40305125-40305166)
chr1 (62-102)||(23175676-23175716)
[»] chr2 (2 HSPs)
chr2 (62-101)||(13391323-13391362)
chr2 (62-101)||(25786273-25786312)
[»] chr4 (3 HSPs)
chr4 (61-141)||(12886422-12886499)
chr4 (84-146)||(44238110-44238169)
chr4 (62-106)||(47300837-47300881)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 4102314 - 4102528
Alignment:
Q  17 agaatagaggaaaatcttgcaagccacttgacatgnnnnnnnnngggttaattaactaaataattcttataaatatttagaattttatttatagatcact 116  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4102314 agaatagaggaaaatcttgcaagccacttgacatgttttttt--gggttaattaactaaataattcttataaatatttagaattttatttatagatcact 4102411  T
Q  117 ttacaaaataaaatcgtactttttaatctttatnnnnnnntttgtcaatatttctttatttctgtaaaattttccatcatcagttttaaggtctataaaa 216  Q
    |||||||||||||||||| |||||| |||||||       |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  4102412 ttacaaaataaaatcgtattttttagtctttataaaaaaatttgtcaatatttcttaatttctgtaaaattttccatcatcatttttaagttctataaaa 4102511  T
Q  217 taaaatttgtctatatt 233  Q
    |||||||||||||||||    
T  4102512 taaaatttgtctatatt 4102528  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 37314526 - 37314446
Alignment:
Q  61 gggttaattaactaaataattcttataaatatttagaattttatttatagatcactttacaaaataaaatcgtactttttaatc 144  Q
    ||||||||||| ||||| || |||||||||||| | |||||||||| || ||  || |||||||||||||| ||||||||||||    
T  37314526 gggttaattaaataaattatccttataaatattcaaaattttattttta-at--ctctacaaaataaaatcatactttttaatc 37314446  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 36258761 - 36258838
Alignment:
Q  61 gggttaattaactaaataattcttataaatatttagaattttatttatagatcactttacaaaataaaatcgtacttttta 141  Q
    ||||||||||| ||||||||  ||||||||||||| |||||||||| ||| |   ||||||||||||||||| ||||||||    
T  36258761 gggttaattaagtaaataatctttataaatatttaaaattttatttttagtt---tttacaaaataaaatcgcacttttta 36258838  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 1087279 - 1087235
Alignment:
Q  62 ggttaattaactaaataattcttataaatatttagaattttattt 106  Q
    |||||||||| |||||| | |||||||||||| ||||||||||||    
T  1087279 ggttaattaagtaaatagtccttataaatattcagaattttattt 1087235  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 46595233 - 46595273
Alignment:
Q  62 ggttaattaactaaataattcttataaatatttagaatttt 102  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  46595233 ggttaattaagtaaatgattcttataaatatttagaatttt 46595273  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 2730473 - 2730428
Alignment:
Q  61 gggttaattaactaaataattcttataaatatttagaattttattt 106  Q
    ||||||||||| ||||| || |||||||||||| ||||||||||||    
T  2730473 gggttaattaagtaaatcatccttataaatattcagaattttattt 2730428  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 28216038 - 28215997
Alignment:
Q  61 gggttaattaactaaataattcttataaatatttagaatttt 102  Q
    ||||||||||| |||||||| | |||||||||||||||||||    
T  28216038 gggttaattaagtaaataatccctataaatatttagaatttt 28215997  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 40305125 - 40305166
Alignment:
Q  61 gggttaattaactaaataattcttataaatatttagaatttt 102  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  40305125 gggttaattaagtaaataatctttataaatatttagaatttt 40305166  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 23175676 - 23175716
Alignment:
Q  62 ggttaattaactaaataattcttataaatatttagaatttt 102  Q
    |||||||||| ||||| ||| ||||||||||||||||||||    
T  23175676 ggttaattaagtaaatgatttttataaatatttagaatttt 23175716  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 13391323 - 13391362
Alignment:
Q  62 ggttaattaactaaataattcttataaatatttagaattt 101  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  13391323 ggttaattaagtaaatgattcttataaatatttagaattt 13391362  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 25786273 - 25786312
Alignment:
Q  62 ggttaattaactaaataattcttataaatatttagaattt 101  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  25786273 ggttaattaagtaaataattcttataaatatttaaaattt 25786312  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 12886422 - 12886499
Alignment:
Q  61 gggttaattaactaaataattcttataaatatttagaattttatttatagatcactttacaaaataaaatcgtacttttta 141  Q
    ||||||||||| ||||| |||| |||||||||| |||||||| ||| ||| || |  ||||||||||||||||| ||||||    
T  12886422 gggttaattaagtaaatgattcctataaatattcagaattttgtttttag-tccc--tacaaaataaaatcgtatttttta 12886499  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 44238169 - 44238110
Alignment:
Q  84 tataaatatttagaattttatttatagatcactttacaaaataaaatcgtactttttaatctt 146  Q
    ||||||||||||||||||||||| ||| ||    ||||||||||||||  |||||||||||||    
T  44238169 tataaatatttagaattttatttttagttc---ctacaaaataaaatcacactttttaatctt 44238110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 47300837 - 47300881
Alignment:
Q  62 ggttaattaactaaataattcttataaatatttagaattttattt 106  Q
    |||||||||| |||||| |||  ||||||||||||||||||||||    
T  47300837 ggttaattaaataaatagttccaataaatatttagaattttattt 47300881  T

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