View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1867_low_29 (Length: 238)

Name: NF1867_low_29
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1867_low_29
NF1867_low_29
[»] chr8 (9 HSPs)
chr8 (48-220)||(24636860-24637032)
chr8 (48-175)||(6094129-6094256)
chr8 (48-175)||(24642655-24642782)
chr8 (48-175)||(21940671-21940798)
chr8 (48-175)||(28554889-28555016)
chr8 (48-175)||(22171495-22171620)
chr8 (63-121)||(2375027-2375085)
chr8 (72-142)||(32872948-32873019)
chr8 (54-105)||(38232520-38232570)
[»] chr6 (15 HSPs)
chr6 (48-175)||(16566394-16566521)
chr6 (48-175)||(17684543-17684670)
chr6 (48-175)||(189051-189178)
chr6 (48-175)||(17691514-17691641)
chr6 (48-175)||(25537233-25537360)
chr6 (48-175)||(29308896-29309023)
chr6 (48-175)||(29315856-29315983)
chr6 (48-175)||(27381326-27381453)
chr6 (48-175)||(27471709-27471836)
chr6 (48-175)||(11651729-11651856)
chr6 (48-157)||(13359361-13359470)
chr6 (49-104)||(31258065-31258120)
chr6 (61-146)||(8509941-8510026)
chr6 (58-123)||(22259925-22259990)
chr6 (65-98)||(27925772-27925805)
[»] chr4 (22 HSPs)
chr4 (48-175)||(868603-868730)
chr4 (48-175)||(5707326-5707453)
chr4 (48-175)||(5713954-5714081)
chr4 (48-175)||(18262218-18262345)
chr4 (48-175)||(19926834-19926961)
chr4 (48-175)||(26963646-26963773)
chr4 (48-175)||(26970469-26970596)
chr4 (54-175)||(8845215-8845336)
chr4 (54-175)||(8858179-8858300)
chr4 (48-175)||(4426678-4426804)
chr4 (48-175)||(28393208-28393335)
chr4 (48-175)||(55612689-55612816)
chr4 (48-175)||(10621407-10621534)
chr4 (48-175)||(10628486-10628613)
chr4 (48-157)||(12357142-12357251)
chr4 (62-175)||(18269093-18269206)
chr4 (48-145)||(5668230-5668327)
chr4 (50-175)||(20311299-20311425)
chr4 (48-123)||(35223576-35223651)
chr4 (48-153)||(5616219-5616324)
chr4 (48-175)||(10677627-10677753)
chr4 (48-175)||(10891267-10891393)
[»] chr3 (27 HSPs)
chr3 (48-173)||(18519984-18520109)
chr3 (48-175)||(17200258-17200385)
chr3 (48-175)||(18522669-18522796)
chr3 (48-175)||(18640820-18640947)
chr3 (48-175)||(19089819-19089946)
chr3 (48-175)||(6110070-6110197)
chr3 (48-175)||(10572666-10572793)
chr3 (48-175)||(13211308-13211435)
chr3 (48-175)||(13248613-13248740)
chr3 (48-175)||(15600958-15601085)
chr3 (48-175)||(15607503-15607630)
chr3 (48-175)||(17781192-17781319)
chr3 (48-175)||(8490494-8490621)
chr3 (48-175)||(10579429-10579556)
chr3 (48-175)||(13516817-13516944)
chr3 (48-175)||(16482557-16482684)
chr3 (48-175)||(15357660-15357787)
chr3 (48-175)||(32056974-32057101)
chr3 (48-175)||(1647595-1647726)
chr3 (61-175)||(15342293-15342407)
chr3 (48-173)||(29924977-29925102)
chr3 (48-173)||(29974130-29974255)
chr3 (62-175)||(16200145-16200258)
chr3 (62-175)||(16200451-16200564)
chr3 (49-175)||(24253462-24253589)
chr3 (48-106)||(18534762-18534820)
chr3 (48-89)||(18510928-18510969)
[»] chr5 (10 HSPs)
chr5 (48-175)||(24695540-24695667)
chr5 (48-175)||(18569937-18570064)
chr5 (48-173)||(19714574-19714699)
chr5 (48-173)||(19707294-19707419)
chr5 (48-144)||(39537968-39538064)
chr5 (48-143)||(31886537-31886632)
chr5 (48-145)||(27347581-27347678)
chr5 (48-180)||(17285801-17285933)
chr5 (48-142)||(22547123-22547217)
chr5 (48-180)||(17298954-17299086)
[»] scaffold0234 (2 HSPs)
scaffold0234 (48-175)||(2395-2522)
scaffold0234 (48-175)||(11286-11413)
[»] scaffold0220 (1 HSPs)
scaffold0220 (48-175)||(18294-18421)
[»] scaffold0186 (1 HSPs)
scaffold0186 (48-175)||(26064-26191)
[»] chr2 (5 HSPs)
chr2 (48-175)||(21330322-21330449)
chr2 (61-173)||(18796525-18796637)
chr2 (48-123)||(19692662-19692737)
chr2 (49-175)||(18619812-18619937)
chr2 (76-173)||(36270199-36270297)
[»] chr1 (14 HSPs)
chr1 (48-175)||(16359109-16359236)
chr1 (48-175)||(18252036-18252163)
chr1 (48-175)||(27131483-27131610)
chr1 (48-175)||(18532588-18532715)
chr1 (48-175)||(21171307-21171434)
chr1 (48-175)||(27310651-27310778)
chr1 (48-175)||(22657295-22657423)
chr1 (48-175)||(36816707-36816834)
chr1 (48-173)||(3855995-3856120)
chr1 (48-122)||(27277682-27277756)
chr1 (76-157)||(12006631-12006712)
chr1 (76-173)||(12014360-12014457)
chr1 (48-117)||(30720625-30720694)
chr1 (54-89)||(9918071-9918106)
[»] scaffold0433 (1 HSPs)
scaffold0433 (49-175)||(7114-7240)
[»] scaffold0063 (1 HSPs)
scaffold0063 (48-175)||(5535-5662)
[»] chr7 (15 HSPs)
chr7 (48-175)||(12750832-12750959)
chr7 (48-175)||(15152449-15152576)
chr7 (48-175)||(18561013-18561140)
chr7 (48-175)||(29327790-29327917)
chr7 (48-175)||(11536136-11536263)
chr7 (48-175)||(11543054-11543181)
chr7 (48-175)||(15148148-15148275)
chr7 (48-175)||(12738542-12738669)
chr7 (48-175)||(18257916-18258043)
chr7 (48-145)||(13392157-13392254)
chr7 (48-123)||(39111819-39111893)
chr7 (64-173)||(2364917-2365026)
chr7 (75-173)||(7396221-7396320)
chr7 (116-157)||(3132748-3132789)
chr7 (92-157)||(10234179-10234244)
[»] scaffold0657 (1 HSPs)
scaffold0657 (48-175)||(999-1126)
[»] scaffold0390 (2 HSPs)
scaffold0390 (48-175)||(7008-7135)
scaffold0390 (48-175)||(14024-14151)
[»] scaffold0008 (1 HSPs)
scaffold0008 (48-175)||(230415-230541)
[»] scaffold0176 (1 HSPs)
scaffold0176 (48-106)||(8446-8504)
[»] scaffold0565 (1 HSPs)
scaffold0565 (61-92)||(10127-10158)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 24636860 - 24637032
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  24636860 catttctttcttgattttgttttgtttcaaaataataaagtccctagaatagttagtccttttaatggaacattaagtataacttaattgtgagaccccg 24636959  T
Q  148 ttaaacataatgaaactattcttaaagtcttcacaattttgaaaaacctctcgtaaatcccttcagtagtatc 220  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24636960 ttaaacataaggaaactattcttaaagtcttcacaattttgaaaaacctctcgtaaatcccttcagtagtatc 24637032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 6094129 - 6094256
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  6094129 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 6094228  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||| |||||||    
T  6094229 ttaaacataaggaaactatttttaaagt 6094256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 24642655 - 24642782
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||    
T  24642655 catttctttattgattttgttttgtttcaaaatcataaagtccctagaattgttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 24642754  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  24642755 ttaaacataaggaaactattcttaaagt 24642782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 21940671 - 21940798
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  21940671 catttctttattgattttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 21940770  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  21940771 ttaaacataaggaaactattctcaaagt 21940798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 28554889 - 28555016
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||| |||||||||||||||| | |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  28554889 catttctttattgattttgtttagtttcaaaataataaaatacctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 28554988  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||||||||||||||| |||||    
T  28554989 ttaaacataatgaaactattctaaaagt 28555016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 22171495 - 22171620
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||     
T  22171495 catttccttattgattttgttttatttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 22171594  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||  ||||||||||| |||||    
T  22171595 ttaaacata--gaaactattctcaaagt 22171620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 2375027 - 2375085
Alignment:
Q  63 tttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacatt 121  Q
    |||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||||    
T  2375027 tttgttttgtttcaaaataataaactccctataataattagtcaatttaatggaacatt 2375085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 32873019 - 32872948
Alignment:
Q  72 tttcaaaataataaagtccctagaatagttagtccattta-atggaacattaactataacttaattgtgaga 142  Q
    ||||||||||||||||||| || |||||||  |||||||| || ||||||||| ||| ||||||||||||||    
T  32873019 tttcaaaataataaagtccttataatagttcatccatttatatagaacattaagtatgacttaattgtgaga 32872948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 38232570 - 38232520
Alignment:
Q  54 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtc 105  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  38232570 tttattgattttgttttatttcaaaataataaa-tctctagaatagttagtc 38232520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 16566521 - 16566394
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  16566521 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 16566422  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  16566421 ttaaacataaggaaactattcttaaagt 16566394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 17684670 - 17684543
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  17684670 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 17684571  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  17684570 ttaaacataaggaaactattctcaaagt 17684543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 189178 - 189051
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  189178 catttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 189079  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  189078 ttaaacataaggaaactattcttaaagt 189051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 17691641 - 17691514
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  17691641 catttctttattgattttgttttctttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 17691542  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  17691541 ttaaacataaggaaactattcttaaagt 17691514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 25537360 - 25537233
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  25537360 catttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtccgtttaatggaacattaagtataactttattgtgagaccccg 25537261  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  25537260 ttaaacataaggaaactattcttaaagt 25537233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 29308896 - 29309023
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||     
T  29308896 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagagccca 29308995  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  29308996 ttaaacataaggaaactattctcaaagt 29309023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 29315856 - 29315983
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||     
T  29315856 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagagccca 29315955  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  29315956 ttaaacataaggaaactattctcaaagt 29315983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 27381453 - 27381326
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  27381453 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 27381354  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||  ||||||||||| |||||    
T  27381353 ttaaacatatggaaactattctcaaagt 27381326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 27471836 - 27471709
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  27471836 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 27471737  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||  ||||||||||| |||||    
T  27471736 ttaaacatatggaaactattctcaaagt 27471709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 11651729 - 11651856
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  11651729 catttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 11651828  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    ||||| |||| ||||||||||| |||||    
T  11651829 ttaaaaataaggaaactattctaaaagt 11651856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 13359470 - 13359361
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||||| ||||||||||| |||| || ||     
T  13359470 catttatttatttattttgttttgtttcaaaataataaagtccctagaatagttagttcgcttaatggagcattaagtataacttaatcgtgaaactcca 13359371  T
Q  148 ttaaacataa 157  Q
    ||||||||||    
T  13359370 ttaaacataa 13359361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 31258120 - 31258065
Alignment:
Q  49 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagt 104  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||    
T  31258120 atttctttattgcttttgttttgtttcaaaataataaagtctctaaaataattagt 31258065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 8509941 - 8510026
Alignment:
Q  61 attttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagacccc 146  Q
    ||||| |||||||| ||||||||||||||  ||||||| |||||| |||| |||||||||||  ||  |||||||| |||||||||    
T  8509941 attttattttgttttaaaataataaagtctatagaataattagtctatttgatggaacattatgtacgacttaattatgagacccc 8510026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 22259990 - 22259925
Alignment:
Q  58 ttgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaa 123  Q
    ||||||||||| |||| |||||||||||| |||||| ||||  |||||||||||||  ||||||||    
T  22259990 ttgattttgttatgttgcaaaataataaactccctaaaataactagtccatttaatataacattaa 22259925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 27925772 - 27925805
Alignment:
Q  65 tgttttgtttcaaaataataaagtccctagaata 98  Q
    |||||||||||||||||||||||||| |||||||    
T  27925772 tgttttgtttcaaaataataaagtccttagaata 27925805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 868603 - 868730
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  868603 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccg 868702  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  868703 ttaaacataaggaaactattctcaaagt 868730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 5707326 - 5707453
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  5707326 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 5707425  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  5707426 ttaaacataaggaaactattctcaaagt 5707453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 5713954 - 5714081
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||     
T  5713954 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagcccatttaatggaacattaagtataacttaattgtgagacccca 5714053  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  5714054 ttaaacataaggaaactattctcaaagt 5714081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 18262218 - 18262345
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  18262218 catttctttattgattttgtttcgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 18262317  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  18262318 ttaaacataaggaaactattctcaaagt 18262345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 19926961 - 19926834
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  19926961 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 19926862  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  19926861 ttaaacataaggaaactattctcaaagt 19926834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 26963646 - 26963773
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  26963646 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaaatataacttaattgtgagacccca 26963745  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  26963746 ttaaacataaggaaactattctcaaagt 26963773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 26970469 - 26970596
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  26970469 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 26970568  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  26970569 ttaaacataaggaaactattctcaaagt 26970596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 8845215 - 8845336
Alignment:
Q  54 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaac 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||    
T  8845215 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8845314  T
Q  154 ataatgaaactattcttaaagt 175  Q
    |||| |||||||||||||||||    
T  8845315 ataaggaaactattcttaaagt 8845336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 8858179 - 8858300
Alignment:
Q  54 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaac 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||    
T  8858179 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8858278  T
Q  154 ataatgaaactattcttaaagt 175  Q
    |||| |||||||||||||||||    
T  8858279 ataaggaaactattcttaaagt 8858300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 4426804 - 4426678
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  4426804 catttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 4426705  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| | |||||||||||||||    
T  4426704 ttaaacataa-ggaactattcttaaagt 4426678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 28393335 - 28393208
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  28393335 catttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 28393236  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  28393235 ttaaacataaggaaactattcttaaagt 28393208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 55612689 - 55612816
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  55612689 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 55612788  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||| ||| |||||    
T  55612789 ttaaacataaggaaactactctcaaagt 55612816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 10621534 - 10621407
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| |||     
T  10621534 catttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgagagccca 10621435  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  10621434 ttaaacataaggaaactattctcaaagt 10621407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 10628613 - 10628486
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| |||     
T  10628613 catttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgagagccca 10628514  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  10628513 ttaaacataaggaaactattctcaaagt 10628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 12357142 - 12357251
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  12357142 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 12357241  T
Q  148 ttaaacataa 157  Q
    ||||||||||    
T  12357242 ttaaacataa 12357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 18269093 - 18269206
Alignment:
Q  62 ttttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaacataatgaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  18269093 ttttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacataaggaa 18269192  T
Q  162 actattcttaaagt 175  Q
    |||||||| |||||    
T  18269193 actattctcaaagt 18269206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 5668327 - 5668230
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccc 145  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||| | | | ||||| |||||||||    
T  5668327 catttctttgttgattttgttttgtttcaaaataataaagtctctagaataattagtctatttaatggagcattaagtgtgatttaatcgtgagaccc 5668230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 175
Target Start/End: Original strand, 20311299 - 20311425
Alignment:
Q  50 tttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaa-ctataacttaattgtgagaccccgt 148  Q
    ||||||||||||||||||||||||| ||||||||||||| | || |||||||| |   || |||||| ||||||  |||||||||||||||||||||| |    
T  20311299 tttctttattgattttgttttgttttaaaataataaagtacttataatagttaatatgttcaatggagcattaaggtataacttaattgtgagaccccat 20311398  T
Q  149 taaacataatgaaactattcttaaagt 175  Q
    ||||||||| || ||| || |||||||    
T  20311399 taaacataaggacactgtttttaaagt 20311425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 35223576 - 35223651
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaa 123  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| ||||||    
T  35223576 catttctttgttgattttgttttgttttaaaataataaagtccctagaataattagtctgtttaatggagcattaa 35223651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 5616219 - 5616324
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||| |||||||||||||||||||||||||||| |||| |||| |||||| ||||  ||||||||||| | | ||| |||  ||||| ||||    
T  5616219 catttctttattcattttgttttgtttcaaaataataaagttcctaaaataattagtctatttcttggaacattaagtctgactaaatcatgagatcccg 5616318  T
Q  148 ttaaac 153  Q
    ||||||    
T  5616319 ttaaac 5616324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 10677753 - 10677627
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| |||| ||||||  | ||||||| |||||| ||| ||||||| | |||| |||     
T  10677753 catttttttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-ccca 10677655  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    ||||||  ||||| | ||||||||||||    
T  10677654 ttaaacgaaatgatattattcttaaagt 10677627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 10891393 - 10891267
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| |||| ||||||  | ||||||| |||||| ||| ||||||| | |||| |||     
T  10891393 catttttttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-ccca 10891295  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    ||||||  ||||| | ||||||||||||    
T  10891294 ttaaacgaaatgatattattcttaaagt 10891267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 18519984 - 18520109
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  18519984 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 18520083  T
Q  148 ttaaacataatgaaactattcttaaa 173  Q
    |||||||||| |||||||||||||||    
T  18520084 ttaaacataaggaaactattcttaaa 18520109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 17200385 - 17200258
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||     
T  17200385 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgatacccct 17200286  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    ||||||||||||||||||||||||||||    
T  17200285 ttaaacataatgaaactattcttaaagt 17200258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 18522669 - 18522796
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  18522669 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 18522768  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  18522769 ttaaacataaggaaactattcttaaagt 18522796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 18640947 - 18640820
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  18640947 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 18640848  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  18640847 ttaaacataaggaaactattctcaaagt 18640820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 19089946 - 19089819
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  19089946 catttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgagacccct 19089847  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    ||||||||||||||||||||||||||||    
T  19089846 ttaaacataatgaaactattcttaaagt 19089819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 6110070 - 6110197
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  6110070 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 6110169  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  6110170 ttaaacataaggaaactattctcaaagt 6110197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 10572793 - 10572666
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  10572793 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 10572694  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  10572693 ttaaacataaggaaactattctcaaagt 10572666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 13211308 - 13211435
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  13211308 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 13211407  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  13211408 ttaaacataaggaaactattctcaaagt 13211435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 13248613 - 13248740
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  13248613 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 13248712  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  13248713 ttaaacataaggaaactattctcaaagt 13248740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 15601085 - 15600958
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  15601085 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 15600986  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  15600985 ttaaacataaggaaactattctcaaagt 15600958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 15607630 - 15607503
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  15607630 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 15607531  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  15607530 ttaaacataaggaaactattctcaaagt 15607503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 17781319 - 17781192
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  17781319 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 17781220  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  17781219 ttaaacataaggaaactattctcaaagt 17781192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 8490494 - 8490621
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||     
T  8490494 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 8490593  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  8490594 ttaaacataaggaaactattctcaaagt 8490621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 10579556 - 10579429
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||     
T  10579556 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgttaaatggaacattaagtataacttaattgtgagacccca 10579457  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  10579456 ttaaacataaggaaactattctcaaagt 10579429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 13516817 - 13516944
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||||||||||||    
T  13516817 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttcatggaacattaagtataacttaattgtgagaccccg 13516916  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||| |||||||||||    
T  13516917 ttaaacataaggaaacgattcttaaagt 13516944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 16482684 - 16482557
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  16482684 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 16482585  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||| ||| |||||    
T  16482584 ttaaacataaggaaactactctcaaagt 16482557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 15357787 - 15357660
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  15357787 catttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 15357688  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||| ||||||| |||||    
T  15357687 ttaaacataaggaacctattctcaaagt 15357660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 32057101 - 32056974
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| || |||||||| ||||| ||||||||    
T  32057101 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacatcaagtataactttattgtaagaccccg 32057002  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  32057001 ttaaacataaagaaactattcttaaagt 32056974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 1647726 - 1647595
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaacta----taacttaattgtgagac 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||    |||||||||||||||||    
T  1647726 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataattaacttaattgtgagac 1647627  T
Q  144 cccgttaaacataatgaaactattcttaaagt 175  Q
    |||||||||||||| ||||||||| |||||||    
T  1647626 cccgttaaacataaggaaactatttttaaagt 1647595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 15342407 - 15342293
Alignment:
Q  61 attttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaacataatga 160  Q
    ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||||||||||||||||||| |||||||||| ||    
T  15342407 attttgttttgtttcaaaataataaagtccctagaatagtttgttcgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 15342308  T
Q  161 aactattcttaaagt 175  Q
    | ||||||| |||||    
T  15342307 acctattctcaaagt 15342293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 29924977 - 29925102
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||  ||||| ||||| ||||||||||||||||     
T  29924977 catttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgagacccca 29925076  T
Q  148 ttaaacataatgaaactattcttaaa 173  Q
    ||||| |||| || | ||||||||||    
T  29925077 ttaaatataaggacattattcttaaa 29925102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 29974130 - 29974255
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||  ||||| ||||| ||||||||||||||||     
T  29974130 catttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgagacccca 29974229  T
Q  148 ttaaacataatgaaactattcttaaa 173  Q
    ||||| |||| || | ||||||||||    
T  29974230 ttaaatataaggacattattcttaaa 29974255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 16200145 - 16200258
Alignment:
Q  62 ttttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaacataatgaa 161  Q
    |||| |||||||||||||||||||||||| ||||||||||||| | |||||||||||||||  |||||||||||||||||||||| |||||||||| ||     
T  16200145 ttttattttgtttcaaaataataaagtccttagaatagttagttcgtttaatggaacattatgtataacttaattgtgagaccccattaaacataaggac 16200244  T
Q  162 actattcttaaagt 175  Q
    | ||||||||||||    
T  16200245 attattcttaaagt 16200258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 16200451 - 16200564
Alignment:
Q  62 ttttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaacataatgaa 161  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||  ||||||||| ||     
T  16200451 ttttattttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattatgtataacttaattgtgagactccaataaacataaggac 16200550  T
Q  162 actattcttaaagt 175  Q
    | ||||||||||||    
T  16200551 attattcttaaagt 16200564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 24253589 - 24253462
Alignment:
Q  49 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgaga-ccccg 147  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||| | || | ||| |||||||||||| ||| ||||||| |||||| ||||     
T  24253589 atttctttattgattttgttttacttcaaaataataaagtccttagaatagctcgttcgtttgatggaacattaagtatgacttaatcgtgagatcccca 24253490  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    | |||||||| || ||||||||||||||    
T  24253489 tcaaacataaggacactattcttaaagt 24253462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 18534762 - 18534820
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18534762 catttctttattgattttgttttgtttcaaaataataaagtccatagaatagttagtcc 18534820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 18510928 - 18510969
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18510928 catttctttattgattttgttttgtttcaaaataataaagtc 18510969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 24695667 - 24695540
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  24695667 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 24695568  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||||||||||||||| |||||    
T  24695567 ttaaacataatgaaactattctaaaagt 24695540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 18570064 - 18569937
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||    
T  18570064 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaattgaacattaagtataacttaattgtgagaccccg 18569965  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||| |||||||||    
T  18569964 ttaaacataaggaaactactcttaaagt 18569937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 19714699 - 19714574
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  19714699 catttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 19714600  T
Q  148 ttaaacataatgaaactattcttaaa 173  Q
    |||||||||| ||| |||||||||||    
T  19714599 ttaaacataaggaatctattcttaaa 19714574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 19707419 - 19707294
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  19707419 catttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgagaccccg 19707320  T
Q  148 ttaaacataatgaaactattcttaaa 173  Q
    |||||||||| ||| |||||||||||    
T  19707319 ttaaacataaggaatctattcttaaa 19707294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 39537968 - 39538064
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagacc 144  Q
    |||||||||| ||||||||||||||||||||||  | |||||| |||||||||| || | |||||||||||||||| ||||||||||||||||||||    
T  39537968 catttctttaatgattttgttttgtttcaaaatggttaagtccttagaatagttggttcgtttaatggaacattaagtataacttaattgtgagacc 39538064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 31886537 - 31886632
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagac 143  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||| |||||| || ||  ||||||| |||||||    
T  31886537 catttctttagtgattttgttttgtttcaaattaataaagtccttagaataattagttcatttaattgaacatcaagtacgacttaatcgtgagac 31886632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 27347678 - 27347581
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccc 145  Q
    ||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||| ||  ||||||||| |||||| | | ||||||| |||||||||    
T  27347678 catttctttgttgattttgttttgattcaaaataataaagtccttagaataattaatctgtttaatggagcattaagtgtgacttaatcgtgagaccc 27347581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 17285933 - 17285801
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||| ||||||||||||||| ||||||||||||||||  |||  |||||||||||||  |||||||||||||||| | | ||||||| |||| ||||      
T  17285933 catttatttattgattttgttatgtttcaaaataataatctccagagaatagttagtctgtttaatggaacattaagtgtgacttaatcgtgaaacccta 17285834  T
Q  148 ttaaacataatgaaactattcttaaagtcttca 180  Q
     |||||  ||||| | |||||||||||| ||||    
T  17285833 gtaaactaaatgacattattcttaaagtattca 17285801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 22547217 - 22547123
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgaga 142  Q
    ||||| |||||| |||||||||| ||| |||||||||||  | ||| |||||||||||  |||||||||||||||| ||||||||||| ||||||    
T  22547217 catttatttattcattttgttttattttaaaataataaaaccgctataatagttagtcggtttaatggaacattaagtataacttaatcgtgaga 22547123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 17299086 - 17298954
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||| ||||||||||||||| |||||  |||||||||  |||  ||||||||||||||  ||||||||||||||| |   ||||||| |||| ||||      
T  17299086 catttatttattgattttgttatgtttataaataataatatccagagaatagttagtccgattaatggaacattaagtgcgacttaatcgtgaaacccta 17298987  T
Q  148 ttaaacataatgaaactattcttaaagtcttca 180  Q
     |||||  ||||| | |||||||||||| ||||    
T  17298986 gtaaactaaatgacattattcttaaagtattca 17298954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 2522 - 2395
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  2522 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 2423  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  2422 ttaaacataaggaaactattctcaaagt 2395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 11413 - 11286
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  11413 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 11314  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  11313 ttaaacataaggaaactattctcaaagt 11286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 18294 - 18421
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||     
T  18294 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaattgaacattaagtataacttaattgtgagacccca 18393  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  18394 ttaaacataaggaaactattctcaaagt 18421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 26191 - 26064
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  26191 catttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccatttaatggaacattaaatataacttaattgtgagacccca 26092  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  26091 ttaaacataaggaaactattctcaaagt 26064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 21330449 - 21330322
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  21330449 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 21330350  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  21330349 ttaaacataaggaaactattctcaaagt 21330322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 18796525 - 18796637
Alignment:
Q  61 attttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaacataatga 160  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | || ||||||| ||    
T  18796525 attttgttttgtttcaaaataacaaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacctcttttaacataagga 18796624  T
Q  161 aactattcttaaa 173  Q
     | ||||||||||    
T  18796625 tattattcttaaa 18796637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 19692737 - 19692662
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaa 123  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  ||||||||||||||||    
T  19692737 catttctttattgattttgttttgtttcaaaataatgaagtccctagaataattagtctgtttaatggaacattaa 19692662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 18619812 - 18619937
Alignment:
Q  49 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgt 148  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||| |||||| | | |||||||| ||||| ||| |    
T  18619812 atttctttgttgattttgttttgtttcaaaataataaagtccctataataattagtctgtttaatggagcattaagtgtgacttaattatgaga-cccat 18619910  T
Q  149 taaacataatgaaactattcttaaagt 175  Q
    |||||| || || | ||||||||||||    
T  18619911 taaacaaaaggatattattcttaaagt 18619937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 36270199 - 36270297
Alignment:
Q  76 aaaataataaagtccctagaatagttagtcca-tttaatggaacattaactataacttaattgtgagaccccgttaaacataatgaaactattcttaaa 173  Q
    |||||||||||||||||||||||||||||  | || |||| ||  |||| | | ||||||| |||||||  | ||||||| ||||| ||||||||||||    
T  36270199 aaaataataaagtccctagaatagttagtttacttaaatgaaatgttaagtgtgacttaatcgtgagacatcattaaacacaatgacactattcttaaa 36270297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 16359236 - 16359109
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||||    
T  16359236 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagaataacttaattgtgagaccccg 16359137  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  16359136 ttaaacataaggaaactattcttaaagt 16359109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 18252036 - 18252163
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  18252036 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 18252135  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  18252136 ttaaacataaggaaactattctcaaagt 18252163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 27131610 - 27131483
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  27131610 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 27131511  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  27131510 ttaaacataaggaaactattctcaaagt 27131483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 18532715 - 18532588
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||     
T  18532715 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagttcgtttaatggaacattaagtataacttaattgtgagacccca 18532616  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  18532615 ttaaacataaggaaactattctcaaagt 18532588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 21171434 - 21171307
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  21171434 catttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttcatggaacattaaatataacttaattgtgagaccccg 21171335  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    || ||||||| |||||||||||||||||    
T  21171334 ttgaacataaggaaactattcttaaagt 21171307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 27310778 - 27310651
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||    
T  27310778 catttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccacg 27310679  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    || ||||||| |||||||||||||||||    
T  27310678 ttgaacataaggaaactattcttaaagt 27310651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 22657423 - 22657295
Alignment:
Q  48 catttctttattgatttt-gttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagacccc 146  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  22657423 catttctttattgatttttgttttgtttcaaaataataaagttcctagaatagttagtctgtttaatggaacattaaatataacttaattgtgagacccc 22657324  T
Q  147 gttaaacataatgaaactattcttaaagt 175  Q
     |||||||||| || || |||||||||||    
T  22657323 tttaaacataaggacacaattcttaaagt 22657295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 36816834 - 36816707
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||| ||||| ||||||||||||| |||    
T  36816834 catttctttattgattttgttttgtttcaaaataatgaagtccctagaatagttcgtctgtttaatggaacattaagtataaattaattgtgagactccg 36816735  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| || | ||||||||||||    
T  36816734 ttaaacataaggacattattcttaaagt 36816707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 3856120 - 3855995
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||     
T  3856120 catttctttgtttattttgttttgtttcaaaataacaaagtccctagaatagttagcccgtttaatggaacattaagtataacttaattgtgagacccca 3856021  T
Q  148 ttaaacataatgaaactattcttaaa 173  Q
    |||||||||| || | ||||||||||    
T  3856020 ttaaacataaggacattattcttaaa 3855995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 27277756 - 27277682
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacatta 122  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| |||||    
T  27277756 catttctttgttgtttttgttttgtttcaaaataataacgtccctagaataattagtccatttaacggagcatta 27277682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 12006712 - 12006631
Alignment:
Q  76 aaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaacataa 157  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||| | |  |||||| |||||||||| | ||||||||    
T  12006712 aaaataataaagtccctagaatagttagtctatttaatggaatattaagtgtgccttaatcgtgagaccccatgaaacataa 12006631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 12014457 - 12014360
Alignment:
Q  76 aaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaacataatgaaactattcttaaa 173  Q
    |||||||||||||| ||||||||  |||||| |||||||||| ||||| | ||| ||||| || ||| ||| |||||||||||||   ||||||||||    
T  12014457 aaaataataaagtcactagaatacatagtccgtttaatggaatattaagtgtaaattaatcgttagatcccattaaacataatgatgttattcttaaa 12014360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 30720694 - 30720625
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaa 117  Q
    ||||| ||||||| |||| |||||||| ||||||||||||| ||| ||||| ||||| | ||||||||||    
T  30720694 catttttttattggttttattttgttttaaaataataaagttcctggaataattagttcgtttaatggaa 30720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 9918106 - 9918071
Alignment:
Q  54 tttattgattttgttttgtttcaaaataataaagtc 89  Q
    |||||||||||||||||||| |||||||||||||||    
T  9918106 tttattgattttgttttgttacaaaataataaagtc 9918071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 7114 - 7240
Alignment:
Q  49 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgt 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |    
T  7114 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatagaacattaagtataacttaattgtgagaccccat 7213  T
Q  149 taaacataatgaaactattcttaaagt 175  Q
    ||||||||||||||||||||| |||||    
T  7214 taaacataatgaaactattctaaaagt 7240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 5535 - 5662
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  5535 catttctttattgatttatttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 5634  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||| ||||||||||||    
T  5635 ttaaacataaggaaattattcttaaagt 5662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 12750832 - 12750959
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| ||    
T  12750832 catttctttattgattttgttttgtttcaaagtaataaagtccctagaatagttagtccgtttaatgaaacattaagtataacttaattgtgagacctcg 12750931  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  12750932 ttaaacataaagaaactattcttaaagt 12750959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 15152449 - 15152576
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  15152449 catttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 15152548  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||  |||||||||||||||||    
T  15152549 ttaaacatacggaaactattcttaaagt 15152576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 18561013 - 18561140
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| ||||||||||||    
T  18561013 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaactgtgagaccccg 18561112  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||| | |||||||||||||||||    
T  18561113 ttaaacattaggaaactattcttaaagt 18561140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 29327790 - 29327917
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||     
T  29327790 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgagacccca 29327889  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  29327890 ttaaacataaggaaactattctcaaagt 29327917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 11536263 - 11536136
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||     
T  11536263 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtacaacttaattgtgagacccca 11536164  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||| ||||||| |||||    
T  11536163 ttaaacataaggaacctattctcaaagt 11536136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 11543181 - 11543054
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||     
T  11543181 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtcagacccca 11543082  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||| ||||||| |||||    
T  11543081 ttaaacataaggaacctattctcaaagt 11543054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 15148148 - 15148275
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||    
T  15148148 catttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttgattgaacattaagtataacttaattgtgagaccccg 15148247  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  15148248 ttaaacataaggaaactattcttaaagt 15148275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 12738542 - 12738669
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||  |    
T  12738542 catttctttattgattttattttgtttcaaaataataaagtccctagaatagttagtttgtttaatgaaacattaattataacttaattgtgagaccttg 12738641  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| |||||||||||||||||    
T  12738642 ttaaacataaggaaactattcttaaagt 12738669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 18258043 - 18257916
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| ||| ||||||||||||||||||     
T  18258043 catttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtctgtttaatggaacattaagtatgacttaattgtgagacccca 18257944  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    ||||||| || || | ||||||||||||    
T  18257943 ttaaacacaaggacattattcttaaagt 18257916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 13392157 - 13392254
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccc 145  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||||||| | ||||||   |||||||| |||||| | | ||||||| |||||||||    
T  13392157 catttctttgttgactttgttttgtttcaaaataataaagttcctagaacaattagtctgcttaatggagcattaagtgtgacttaatcgtgagaccc 13392254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 39111819 - 39111893
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaa 123  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||||  ||||| ||||||| ||||||||    
T  39111819 catttctttattaattttgttttatttcaaaa-aataaagtccctagaatagcgagtccgtttaatgaaacattaa 39111893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 2364917 - 2365026
Alignment:
Q  64 ttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaacataatgaaac 163  Q
    ||||| |||||||||||||||||||| |||||||| ||||||  | |||||||||||||| | |  |||||| |||||| ||| ||||||  ||||| |     
T  2364917 ttgttatgtttcaaaataataaagtctctagaataattagtctttctaatggaacattaagtgtggcttaatcgtgagaacccattaaactaaatgacat 2365016  T
Q  164 tattcttaaa 173  Q
    ||||||||||    
T  2365017 tattcttaaa 2365026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 7396221 - 7396320
Alignment:
Q  75 caaaataataaagtccctagaatagttagtccatttaa-tggaacattaactataacttaattgtgagaccccgttaaacataatgaaactattcttaaa 173  Q
    |||||||| || ||| |||||||||||||| ||||||| ||||||||||| ||| |||||||  ||||||||  ||||||||||  ||| ||||||||||    
T  7396221 caaaataaaaatgtcgctagaatagttagttcatttaaatggaacattaagtatgacttaatcttgagaccctattaaacataagaaaattattcttaaa 7396320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 3132748 - 3132789
Alignment:
Q  116 aacattaactataacttaattgtgagaccccgttaaacataa 157  Q
    |||||||| | |||||||||||||||||||| ||||||||||    
T  3132748 aacattaagtgtaacttaattgtgagaccccattaaacataa 3132789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 10234179 - 10234244
Alignment:
Q  92 tagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccgttaaacataa 157  Q
    ||||||||||||||| ||||||| | |||||| |||||||||||  |||||  || ||||||||||    
T  10234179 tagaatagttagtccgtttaatgaaccattaaatataacttaatcatgagattccattaaacataa 10234244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 999 - 1126
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||     
T  999 catttctttattgattttgttttgtttcaaaataataaagtccctaaaatagttagtccgtttaatgaaacattaagtataacttaattgtgagacccca 1098  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  1099 ttaaacataaagaaactattctcaaagt 1126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 7135 - 7008
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||      
T  7135 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaactgtgagacccta 7036  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  7035 ttaaacataaggaaactattctcaaagt 7008  T

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Target: scaffold0390; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 14151 - 14024
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| |||||||||||     
T  14151 catttctttattgattttgttttgtttcaaaataataaagtccctacaatagttagtccgtttaatggaacattaagtataacttaactgtgagacccca 14052  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||||||||| |||||    
T  14051 ttaaacataaggaaactattctcaaagt 14024  T

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Target: scaffold0008 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 230541 - 230415
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaactataacttaattgtgagaccccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  230541 catttctttattgattttgttttgtttcaaaataataaagttcttataatagttagtccgtttaatggaacattaagtataacttaattgtgagacccc- 230443  T
Q  148 ttaaacataatgaaactattcttaaagt 175  Q
    |||||||||| ||||| |||||||||||    
T  230442 ttaaacataaggaaaccattcttaaagt 230415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 8504 - 8446
Alignment:
Q  48 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8504 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 8446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 92
Target Start/End: Complemental strand, 10158 - 10127
Alignment:
Q  61 attttgttttgtttcaaaataataaagtccct 92  Q
    ||||||||||||||||||||||||||||||||    
T  10158 attttgttttgtttcaaaataataaagtccct 10127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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