View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_30 (Length: 238)
Name: NF1867_low_30
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 28508669 - 28508890
Alignment:
| Q |
16 |
aggcaccaatgatttaaatcatttaatgaatgcaaattaagccatactatta---tctaagaattgcaatttgattatttgaataattttttgatgtcaa |
112 |
Q |
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| T |
28508669 |
aggcaccaatgatttaaatcatttaatgaatgcaaattaagccatactattagtatatcagaattgcaatttgattatttgaataatttcttggtgtcaa |
28508768 |
T |
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| Q |
113 |
caatcctctttaaattcatatttactatacactaatgccaatggcaagttggttgttaagtttgtgtttagtttatagttatagctaaggaattcggatt |
212 |
Q |
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| T |
28508769 |
caatc-tctttaaattcatatttacctgacactaatgccaaccgcaagttggttgttaagtttgtgtttagtttatagttatagctaaggaattcggatt |
28508867 |
T |
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| Q |
213 |
gcgtgcaatttgcatccttaatc |
235 |
Q |
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| T |
28508868 |
gcgtgcaatctgcatccttaatc |
28508890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 28508954 - 28509057
Alignment:
| Q |
132 |
atttactatacactaatgccaatggcaagttggttgttaagtttgtgtttagtttatagttatagctaaggaattcggattgcgtgcaatttgcatcctt |
231 |
Q |
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| T |
28508954 |
atttaccaaacactaataccaatgccaagttggttgttaagtttgtgtttagattatagttatagttaaggaatttggattgcgtgcagtttacatcctc |
28509053 |
T |
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| Q |
232 |
aatc |
235 |
Q |
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|||| |
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| T |
28509054 |
aatc |
28509057 |
T |
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