View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_34 (Length: 205)
Name: NF1867_low_34
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 1444998 - 1445122
Alignment:
| Q |
63 |
gcagtcatatcttaaatttggtgaatcaaattaaccataaagtaagggaattttgtttggcaaattgaagttcatgttatataccgcaccgcacataatc |
162 |
Q |
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| T |
1444998 |
gcagtcatatcttaaatttggtgaatcaaattaaccataaagtaagggaattttgtttggcaaattgaagttcatgttatataccgcaccgcacataatc |
1445097 |
T |
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| Q |
163 |
aacaagtttgtaagatctatacatt |
187 |
Q |
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| T |
1445098 |
aacaagtttgtaagatctatacatt |
1445122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 1453123 - 1453187
Alignment:
| Q |
67 |
tcatatcttaaatttggtgaatcaaattaaccataaagtaagggaattttgtttggcaaattgaa |
131 |
Q |
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| T |
1453123 |
tcatatcttaaatatggtgaatcaaattaaccataaagtaagagaatttcggttggcaaattgaa |
1453187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 1444955 - 1444986
Alignment:
| Q |
17 |
ttcttgagacataatagttaaatattcatgat |
48 |
Q |
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| T |
1444955 |
ttcttgagacataatagttaaatattcatgat |
1444986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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