View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_6 (Length: 498)
Name: NF1867_low_6
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 46617088 - 46616605
Alignment:
| Q |
1 |
taaaaagctataattttccctagtcaataaaccaaaaaatgtcaacnnnnnnnctgaaagacacaattgttgacgcagcttcaaaatgaatacaccatgc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46617088 |
taaaaagctataattttcccttgtcaataaaccaaaaaatgtcaactttttttctgaaagacacaattgttgacgcagcttcaaaatgaatacaccatgc |
46616989 |
T |
|
| Q |
101 |
aacgagcaagggaagacattgaaagtgnnnnnnncccttatataagggtgaagaattttgaataccaacaaacaagataatcaacccagatccctcttga |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46616988 |
aacgagcaagggaagacattgaaagtgaaaaaaacccttatataagggtgaagaattttgaataccaacaaacaagataatcaacccagatccctcttga |
46616889 |
T |
|
| Q |
201 |
tcctcttccatcttataacatttattcttaagccatgatcagataacatttatctacatgattggataactcaaatcttgtagattagatagcataatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46616888 |
tcctcttccatcttataacatttattcttaagccatgatcagataacatttatctacatgattggataactcaaatcttgtagattagatagcataatca |
46616789 |
T |
|
| Q |
301 |
aaaagcatacttaaaacatgagctgcaattgtaactacgcat-aaaagtaatatctatccctaaggaattgatactttgttttctaaattaatagccctt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46616788 |
aaaagcatacttaaaacatgagctgcaattgtaactacgcataaaaagtaatatctatccctaaggaattgatactttgttttctaaattaacagccctt |
46616689 |
T |
|
| Q |
400 |
gcatattaacagagtattagatctcaaatattttcactttaataactatcaatcaactcggggtcagaatagaacacaagcaac |
483 |
Q |
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| T |
46616688 |
gcatattaacagagtattagatctcaaatattttcactttaataactatcaatcaactcggggtcagaatagaacacaagcaac |
46616605 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 15772090 - 15772145
Alignment:
| Q |
267 |
taactcaaatcttgtagattagatagcataatcaaaaagcatacttaaaacatgag |
322 |
Q |
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||||||||||| ||||||||||||| ||||||||| | |||||||| ||||||||| |
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| T |
15772090 |
taactcaaatcatgtagattagataacataatcaagatgcatacttcaaacatgag |
15772145 |
T |
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