View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1867_low_7 (Length: 458)

Name: NF1867_low_7
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1867_low_7
NF1867_low_7
[»] chr3 (3 HSPs)
chr3 (7-377)||(3483435-3483785)
chr3 (374-443)||(3482654-3482723)
chr3 (17-149)||(30993181-30993311)
[»] chr1 (4 HSPs)
chr1 (227-365)||(52274298-52274436)
chr1 (374-443)||(52273278-52273347)
chr1 (17-138)||(12786267-12786386)
chr1 (7-94)||(52274462-52274547)
[»] chr8 (1 HSPs)
chr8 (30-138)||(6465731-6465837)
[»] scaffold0088 (1 HSPs)
scaffold0088 (35-149)||(35452-35564)
[»] chr6 (1 HSPs)
chr6 (101-141)||(19892896-19892936)
[»] scaffold0094 (1 HSPs)
scaffold0094 (126-190)||(48232-48297)
[»] chr7 (1 HSPs)
chr7 (17-53)||(18147549-18147585)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 377
Target Start/End: Complemental strand, 3483785 - 3483435
Alignment:
Q  7 gagagaagaaaaacaaggcgacaaaagaaaaattagggttgtggagagaaaaagcaagatggcatagaaagaagaacttgagagagatctcattatcgta 106  Q
    |||| ||||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||   |||||| ||    
T  3483785 gagaaaagaaaaacaaggcggcaaaagaaaaactagggctgtgaagagaaaaagcaagatggcatagaaagaagaacttgagagagat---attatcata 3483689  T
Q  107 gaaattcataaaattctccaaactagaggtaagggaggagtctttgttcacataaagattgtatgatcgtataggtaatgaagggttgttacttttcgat 206  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||| |||| ||||||||||||||||||||||    
T  3483688 gaaattcatcaaattctccaaactagaggtaagggaggagtctctgtttacataagggttgtatgatcgtatgggtagtgaagggttgttacttttcgat 3483589  T
Q  207 gtttcttaactttcgatgtttcttaactttctatgatgattcctggttaaatttgtgttcttttatgttgatctaattatatatttgattgtctttttga 306  Q
    ||||||||||                 |||||||||||||||||  ||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||    
T  3483588 gtttcttaac-----------------tttctatgatgattccttattaaatttgtgttttttaatgttgatgtaattatatatttgattttctttttga 3483506  T
Q  307 ttaactcattaaattcaaaccggcgggatgtttatatgttgacatgaatatgatttgtgtgtttgcatatg 377  Q
    |||||||||||||||| |||||||  |||||||||| ||||||||||||||||||||||||||| ||||||    
T  3483505 ttaactcattaaattcgaaccggcttgatgtttatacgttgacatgaatatgatttgtgtgtttacatatg 3483435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 374 - 443
Target Start/End: Complemental strand, 3482723 - 3482654
Alignment:
Q  374 tatgttgataaggttaagccttgccattggatataatatcttattgggaatattttagtagtgaaatttt 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  3482723 tatgttgataaggttaagccttgccattggatataatatcttattgggaatacttcagtagtgaaatttt 3482654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 30993181 - 30993311
Alignment:
Q  17 aaacaaggcgacaaaagaaaaattagggttgtggagagaaaaagcaagatggcatagaaagaagaa-cttgagagagatctcattatcgtagaaattcat 115  Q
    ||||||| || |||||| |||| |||||||||||||||||||| ||||||| |||||||||||||| || ||||||||  ||| |   |||  |||||||    
T  30993181 aaacaagacggcaaaaggaaaactagggttgtggagagaaaaaacaagatgacatagaaagaagaacctggagagagacttcact---gtatgaattcat 30993277  T
Q  116 aaaattctccaaactagaggtaagggaggagtct 149  Q
     ||||||||||||||||||||||||| |||||||    
T  30993278 caaattctccaaactagaggtaaggggggagtct 30993311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 227 - 365
Target Start/End: Complemental strand, 52274436 - 52274298
Alignment:
Q  227 tcttaactttctatgatgattcctggttaaatttgtgttcttttatgttgatctaattatatatttgattgtctttttgattaactcattaaattcaaac 326  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||    
T  52274436 tcttaactttctatgatgattccttgttaaatatgtgttcttttatgttgatgtaattatatatttgattttctttttgattaactcattaaattcgaac 52274337  T
Q  327 cggcgggatgtttatatgttgacatgaatatgatttgtg 365  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  52274336 cggctggatgtttatacgttgacatgaatatgatttgtg 52274298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 374 - 443
Target Start/End: Complemental strand, 52273347 - 52273278
Alignment:
Q  374 tatgttgataaggttaagccttgccattggatataatatcttattgggaatattttagtagtgaaatttt 443  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  52273347 tatgttgataaggttaagccttgccatcggatataatatcttattgggaatatttcagtagtgaaatttt 52273278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 12786386 - 12786267
Alignment:
Q  17 aaacaaggcgacaaaagaaaaattagggttgtggagagaaaaagcaagatggcatagaaagaagaacttg-agagagatctcattatcgtagaaattcat 115  Q
    |||||| ||| |||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||| || |||||||| ||   | ||||| |||||||    
T  12786386 aaacaaagcggcaaaaggaaaactagggttgtggagagaaaaggcaaggtggcatagaaagaagaacctgaagagagatttc---accgtaggaattcat 12786290  T
Q  116 aaaattctccaaactagaggtaa 138  Q
     ||||||||||||||||||||||    
T  12786289 caaattctccaaactagaggtaa 12786267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 52274547 - 52274462
Alignment:
Q  7 gagagaagaaaaacaaggcgacaaaagaaaaattagggttgtggagagaaaaagcaagatggcatagaaagaagaacttgagagagat 94  Q
    |||| ||| ||||||||| | ||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52274547 gagaaaaggaaaacaaggtggcaaaagaaaaactat--ttgtggagagaaaaagcaagatggcatagaaagaagaacttgagagagat 52274462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 6465837 - 6465731
Alignment:
Q  30 aaagaaaaattagggttgtggagagaaaaagcaagatggcatagaaagaagaa-cttgagagagatctcattatcgtagaaattcataaaattctccaaa 128  Q
    ||||||||| |||||||||||||||||||||||||||| || | ||||||||| || ||||||||| | | ||   ||||||||||| ||||||||| ||    
T  6465837 aaagaaaaactagggttgtggagagaaaaagcaagatgacacacaaagaagaacctggagagagattttacta---tagaaattcatcaaattctccgaa 6465741  T
Q  129 ctagaggtaa 138  Q
    ||||||||||    
T  6465740 ctagaggtaa 6465731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 35452 - 35564
Alignment:
Q  35 aaaattagggttgtggagagaaaaagcaagatggcatagaaagaagaac-ttgagagagatctcattatcgtagaaattcataaaattctccaaactaga 133  Q
    |||| ||||||||||||||||||| |||||| ||||||| |||| |||| | ||||||||| ||   | ||||| || |||| ||||||  |||||||||    
T  35452 aaaactagggttgtggagagaaaaggcaagaaggcatagcaagaggaacgtagagagagatttc---accgtaggaactcatcaaattcgacaaactaga 35548  T
Q  134 ggtaagggaggagtct 149  Q
    |||||||| |||||||    
T  35549 ggtaaggggggagtct 35564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 19892936 - 19892896
Alignment:
Q  101 atcgtagaaattcataaaattctccaaactagaggtaaggg 141  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  19892936 atcgtagaaattcatcaaattctccgaactagaggtaaggg 19892896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 48297 - 48232
Alignment:
Q  126 aaactagaggtaagggaggagtctttgttca-cataaagattgtatgatcgtataggtaatgaagg 190  Q
    |||||||||||||||| ||||||| | |||| ||||| |||||||||||| ||| |||| ||||||    
T  48297 aaactagaggtaaggggggagtctctattcaccataaggattgtatgatcatatgggtagtgaagg 48232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 18147549 - 18147585
Alignment:
Q  17 aaacaaggcgacaaaagaaaaattagggttgtggaga 53  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  18147549 aaacaaagcgacaaaagaaaaactagggttgtggaga 18147585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University