View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1867_low_9 (Length: 406)
Name: NF1867_low_9
Description: NF1867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1867_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 113 - 395
Target Start/End: Complemental strand, 4354167 - 4353877
Alignment:
| Q |
113 |
gttttagggtatgagactgttcagatgtcaatgtaatcaaacttttaaactattctcatgtaatcgactttccttactaatgcttctacacctgcattct |
212 |
Q |
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| T |
4354167 |
gttttagggtatgagactgttcagatgtcaatgtaatcaaacttttaaactattctcatgtaatcgactttccttactgatgcttctacacctgtattct |
4354068 |
T |
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| Q |
213 |
ttgcacatgctacaacaaaaaatatcttaatatgttctaatga-------ttctatt-ctaatctcatattgtataatcattcattccatgtatgtaaca |
304 |
Q |
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| T |
4354067 |
ttgcacatgctacaacaaaaaatatcttaatatgttcttatgagttatgattctatttctaatctcatattgtataatcattcattccatgtatgtaaca |
4353968 |
T |
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| Q |
305 |
ttacaatctcagcaacactcgatttactttgtcgctagcttatcatccatctttgattccatacaacaatacaaatcctatagttgttcat |
395 |
Q |
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| T |
4353967 |
ttacaatctcagcaacactcgatttactttgtcgctagcttatcatccatctttgattccatacaacaatacaaatcctatagttgttcat |
4353877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 4354426 - 4354327
Alignment:
| Q |
1 |
ccatgcgctttgtgcagtgaaggcatgaagcatatgattactgtcactgaaaactttcactcaaggctttgagagcagggttaggatccatagtgtgtta |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4354426 |
ccatgcgctttgtgaagtgaaggcatgaagcatatgattactgtcactgaaaactttcactcaaggctttgagagcaggtttaggatccatagtgtgtta |
4354327 |
T |
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