View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18680_high_3 (Length: 329)
Name: NF18680_high_3
Description: NF18680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18680_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 12053854 - 12053561
Alignment:
| Q |
13 |
aatataaggtacatcaaaaggacaattgataatggaatgctaattcataaccaaaggaaagctaataaaaaagaagttgcatatggctactctaactcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12053854 |
aatataaggtacatcaaaaggacaattgataatggaatgctaattcataaccaaaggaaagctaataaaaaagaagttgcatatggctactctaactcaa |
12053755 |
T |
|
| Q |
113 |
attatggaggaggtcaagatgataagagaacttgcaagctatcttttcaatatgattagtgcaagtctaatatcttggagcacgaagaagtagggaatag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12053754 |
attatggaggaggtcaagatgataagagaac-tgcaagctatcttttcaatatgattagtacaagtctaa-----tggagcacgaagaagtagggaatag |
12053661 |
T |
|
| Q |
213 |
tggctctatcatcttgggaagctaaatatgtggaaacttatgatgcagcctgtcaagcattgtggatagaaatgctacttgaagtccccgtgagcaattg |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12053660 |
tggctctatcatcttgagaagctaaatatgcggaaacttatgatgcagcctgtcaagcattgtggatagaaatgctacttgaagtccccgtgagcaattg |
12053561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 14799035 - 14798946
Alignment:
| Q |
197 |
aagaagtagggaatagtggctctatcatcttgggaagctaaatatgtggaaacttatgatgcagcctgtcaagcattgtggatagaaatg |
286 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||||| |||||||||||||| | ||||| | ||||||| ||||| ||| | ||||| |||||| |
|
|
| T |
14799035 |
aagaagcagggcatagtagctttatcatcttctgaagctaaatatgttgcaacttcttatgcagcatgtcaggcactatggattgaaatg |
14798946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University