View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18680_high_4 (Length: 252)
Name: NF18680_high_4
Description: NF18680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18680_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 19428643 - 19428887
Alignment:
| Q |
1 |
cacaattgaaagcttcagtgacaacagaagagagaaggccataacagtaaggcaaggtggtggtgttggaatgatacttattgaccataatgccaaagaa |
100 |
Q |
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| T |
19428643 |
cacaatcgaaagcttcagtgacaacagaagagagaaggccataacagtaaggcaaggtggtggtgttggaatgatacttattgaccataatgccaaagaa |
19428742 |
T |
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| Q |
101 |
attggttttcaattcgttattccaagcactcttatcggtcaggattcagtagaaaagcttcaagcatacataaaagcggataagtgagtttttgaaaaaa |
200 |
Q |
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| T |
19428743 |
attggttttcaattcgttattccaagcactcttatcggtcaggattcagtggaaaagcttcaagcatacataaaagcggataggtgagtttttgaaaaaa |
19428842 |
T |
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| Q |
201 |
tctacaatacggaagttagtcgcatcatcacactttgatgatgtc |
245 |
Q |
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| T |
19428843 |
tctacaatatggaagttagtcgcatcatcacactttgaagatgtc |
19428887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 19421879 - 19422123
Alignment:
| Q |
1 |
cacaattgaaagcttcagtgacaacagaagagagaaggccataacagtaaggcaaggtggtggtgttggaatgatacttattgaccataatgccaaagaa |
100 |
Q |
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| T |
19421879 |
cacaattgaaagctttgctgacaacagaagagagaaagccataacaataaagcaaggcggaggtgttggaatgatacttattgaccataatgccaaagaa |
19421978 |
T |
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| Q |
101 |
attggttttcaattcgttattccaagcactcttatcggtcaggattcagtagaaaagcttcaagcatacataaaagcggataagtgagtttttgaaaaaa |
200 |
Q |
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| T |
19421979 |
attggttttcaatttgttattccaagcactcttattggtcaggattcagtagaagagcttcaagcatacataaaaacggaaaagtgagtttttgaaaaaa |
19422078 |
T |
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| Q |
201 |
tctacaatacggaagttagtcgcatcatcacactttgatgatgtc |
245 |
Q |
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| T |
19422079 |
tctacaatatcgaagttagtcacatcatcacactttgatgatgtc |
19422123 |
T |
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