View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18680_low_1 (Length: 974)

Name: NF18680_low_1
Description: NF18680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18680_low_1
NF18680_low_1
[»] chr1 (5 HSPs)
chr1 (1-958)||(3451652-3452609)
chr1 (704-753)||(26462653-26462702)
chr1 (696-746)||(3148159-3148209)
chr1 (687-753)||(43328469-43328535)
chr1 (693-749)||(26777374-26777431)
[»] chr3 (9 HSPs)
chr3 (149-263)||(48698252-48698366)
chr3 (690-753)||(18267999-18268062)
chr3 (693-747)||(49636823-49636877)
chr3 (697-760)||(53791953-53792016)
chr3 (704-753)||(19323456-19323505)
chr3 (691-747)||(2988934-2988990)
chr3 (693-753)||(47542537-47542597)
chr3 (697-747)||(42748405-42748455)
chr3 (704-753)||(13725310-13725359)
[»] chr5 (6 HSPs)
chr5 (693-745)||(28322251-28322303)
chr5 (696-737)||(40141299-40141340)
chr5 (696-747)||(15086706-15086757)
chr5 (692-755)||(42370145-42370207)
chr5 (693-726)||(17535650-17535683)
chr5 (689-726)||(29200792-29200829)
[»] chr4 (5 HSPs)
chr4 (703-747)||(2796554-2796598)
chr4 (698-743)||(1386533-1386578)
chr4 (697-749)||(20119951-20120003)
chr4 (697-749)||(31277025-31277077)
chr4 (711-749)||(32369927-32369965)
[»] chr6 (10 HSPs)
chr6 (645-743)||(4012732-4012829)
chr6 (699-753)||(6294539-6294593)
chr6 (639-753)||(10760787-10760898)
chr6 (693-747)||(6284658-6284712)
chr6 (703-749)||(34625740-34625786)
chr6 (698-745)||(6074523-6074570)
chr6 (702-753)||(8923278-8923329)
chr6 (704-742)||(32577472-32577510)
chr6 (703-749)||(34598544-34598590)
chr6 (697-730)||(24821698-24821731)
[»] chr7 (9 HSPs)
chr7 (696-753)||(46179910-46179967)
chr7 (687-750)||(44172881-44172944)
chr7 (698-744)||(31837762-31837808)
chr7 (691-752)||(7139436-7139497)
chr7 (687-740)||(22636456-22636509)
chr7 (704-753)||(23948394-23948443)
chr7 (687-748)||(30013202-30013263)
chr7 (693-754)||(31808506-31808567)
chr7 (693-753)||(34399893-34399954)
[»] chr2 (3 HSPs)
chr2 (691-745)||(35198226-35198280)
chr2 (704-745)||(8765409-8765450)
chr2 (704-753)||(28369813-28369862)
[»] chr8 (1 HSPs)
chr8 (693-747)||(3066050-3066104)


Alignment Details
Target: chr1 (Bit Score: 902; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 902; E-Value: 0
Query Start/End: Original strand, 1 - 958
Target Start/End: Complemental strand, 3452609 - 3451652
Alignment:
Q  1 taatctttacaaatatacaaacaacagtaacagacaacttaggaagttatagagagattagtctccacaattgcacgcgaggatacatttttacaataaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452609 taatctttacaaatatacaaacaacaataacagacaacttaggaagttatagagagattagtctccacaattgcacgcgaggatacatttttacaataaa 3452510  T
Q  101 cacaatcttttagtagtatattatcattttttataccatctcatattaaatgcagatgacagcaaacacaatgtcagagagtgctgaagaatgtttcgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452509 cacaatcttttagtagtatattatcattttttataccatctcatattaaatgcagatgacagcaaacacaatgtcagagagtgctgaagaatgtttcgcc 3452410  T
Q  201 aacggtatggacgcatttgtgtcaaaaccagtgacattcctaaaattgaaagagtgtcttgaaaagtatctaagctgacagccacgtaaattttacttgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3452409 aacggtatggacgcatttgtgtcaaaaccagtgacattcctaaaattgaaagagtgtcttgaaaagtatctaagctgacagccatgtaaattttacttgt 3452310  T
Q  301 gtataaaggaaataagagcctaggaaagttttgcgaaagaatgcattgtgttcttttcttcatcagtgtcattgcatagatctaaaatattcttttcact 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| |||    
T  3452309 gtataaaggaaataagagcctaggaaagttttgcgaaagaatgcatcgtgttcttctcttcatcagtgtcattgtatagatctaaaatattcttttgact 3452210  T
Q  401 cctaatttttctagtagtgctgaagggagtgctgcaaaaatagatagtataggactaattggagtgagaatgtagaggtataaaaacctttcccaatagg 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  3452209 cctaatttttctagtagtgctgaagggagtgctgcaaaaatagatagtataggactaattggagtgtgaatgtagaggtataaaaacctttcccaataga 3452110  T
Q  501 ttataaattggaaactttgaccattggcactacaaaggaacttcacaaaagaagtatcataccagagaaaaggtaatctctttcaaagttgatggtagta 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452109 ttataaattggaaactttgaccattggcactacaaaggaacttcacaaaagaagtatcataccagagaaaaggtaatctctttcaaagttgatggtagta 3452010  T
Q  601 ttttattttcttctactgctacacacttgtgaaaaattcctctgtagcaccgacacttgtgattgaagacgtatccggtgtccatcacaccaacacgaca 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3452009 ttttattttcttctactgctacacacttgtgaaaaattcctctgtagcaccgacacttgtgattgaagacgtatccggtgtccatcacaccgacacgaca 3451910  T
Q  701 ccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgccgtgtctgtgtcggtacttcatggaaaatttcaatcttttcggcta 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||  |||||||||    
T  3451909 ccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgtcgtgtccgtgtcggtacttcatggaaaatttcaatgctttcggcta 3451810  T
Q  801 ttccaagtacaccgaccctttttccatattcattcgctacacacttggaacatttaaggaaggagtagcttaagagctcagcctaacaactaaaaacaga 900  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3451809 ttccaagtacaccgaccctttttccatattcattcgttacacacttggaacatttaaggaaggagtagcttaagagctcagcctaacaactaaaaacaga 3451710  T
Q  901 attacaactaatataactaactaaccaacgatgagctatatcagttaatactatatcc 958  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3451709 attacaactaatataactaactaaccaacgatgagctatatcagttaatactatatcc 3451652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 704 - 753
Target Start/End: Original strand, 26462653 - 26462702
Alignment:
Q  704 acacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    ||||||||||||| ||||||||| ||| |||||| |||||||||||||||    
T  26462653 acacatgtgattacattcaattatttcattttcttaaattattatcagtg 26462702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 746
Target Start/End: Complemental strand, 3148209 - 3148159
Alignment:
Q  696 cgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatt 746  Q
    ||||||| ||||||||||||| ||| ||||||||  |||||||||||||||    
T  3148209 cgacaccgacacatgtgattatattaaattaatttattttctcaaattatt 3148159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 687 - 753
Target Start/End: Complemental strand, 43328535 - 43328469
Alignment:
Q  687 acaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    ||||||||||||||   ||||||||| ||| ||| ||||| ||| ||||||||||||||||| ||||    
T  43328535 acaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtg 43328469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 749
Target Start/End: Original strand, 26777374 - 26777431
Alignment:
Q  693 acacgacaccaacacatgtgattaaattcaattaattc-gttttctcaaattattatc 749  Q
    |||||||||| ||||||||||||| |||||||||| ||  |||| |||||||||||||    
T  26777374 acacgacacccacacatgtgattacattcaattaagtcatttttttcaaattattatc 26777431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 48698252 - 48698366
Alignment:
Q  149 aatgcagatgacagcaaacacaatgtcagagagtgctgaagaatgtttcgccaacggtatggacgcatttgtgtcaaaaccagtgacattcctaaaattg 248  Q
    ||||||||||||||||||  |  ||||||||||||||||||||||||| || || ||||||||| |||||||||||||||| | ||  || | |||||||    
T  48698252 aatgcagatgacagcaaatgctttgtcagagagtgctgaagaatgttttgctaatggtatggactcatttgtgtcaaaacctgcgagtttacgaaaattg 48698351  T
Q  249 aaagagtgtcttgaa 263  Q
    ||||||||| |||||    
T  48698352 aaagagtgtattgaa 48698366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 690 - 753
Target Start/End: Original strand, 18267999 - 18268062
Alignment:
Q  690 ccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    ||||||| ||||| |||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  18267999 ccaacacaacaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtg 18268062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 693 - 747
Target Start/End: Original strand, 49636823 - 49636877
Alignment:
Q  693 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 747  Q
    ||||||||||| | |||||||||| ||||||||||||| ||||||||||||||||    
T  49636823 acacgacaccagcgcatgtgattacattcaattaattcattttctcaaattatta 49636877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 697 - 760
Target Start/End: Original strand, 53791953 - 53792016
Alignment:
Q  697 gacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgccgtgtc 760  Q
    |||||| ||||||||| ||| ||||||||| | | ||||||||||||||||| |||||||||||    
T  53791953 gacaccgacacatgtggttacattcaattattcctttttctcaaattattattagtgccgtgtc 53792016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 704 - 753
Target Start/End: Original strand, 19323456 - 19323505
Alignment:
Q  704 acacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    |||||||||||||||||||||||  || ||||||||||||| ||||||||    
T  19323456 acacatgtgattaaattcaattatgtcattttctcaaattactatcagtg 19323505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 691 - 747
Target Start/End: Complemental strand, 2988990 - 2988934
Alignment:
Q  691 caacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 747  Q
    |||||||||||||||||||| ||||||||||| ||| ||  |||| |||||||||||    
T  2988990 caacacgacaccaacacatgcgattaaattcatttattttattttgtcaaattatta 2988934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 693 - 753
Target Start/End: Complemental strand, 47542597 - 47542537
Alignment:
Q  693 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    |||| ||||| ||||||||||||| |||||| || ||| |||||||||||||||| |||||    
T  47542597 acacaacaccgacacatgtgattacattcaaatagttcattttctcaaattattaccagtg 47542537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 697 - 747
Target Start/End: Complemental strand, 42748455 - 42748405
Alignment:
Q  697 gacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 747  Q
    ||||||||||||||||||||||||||| || |  ||||||||| |||||||    
T  42748455 gacaccaacacatgtgattaaattcaactattctgttttctcagattatta 42748405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 753
Target Start/End: Complemental strand, 13725359 - 13725310
Alignment:
Q  704 acacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    ||||||||||||  ||||||||||||| |||||||| ||||| |||||||    
T  13725359 acacatgtgatttcattcaattaattcattttctcatattatcatcagtg 13725310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 693 - 745
Target Start/End: Complemental strand, 28322303 - 28322251
Alignment:
Q  693 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattat 745  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  28322303 acactacaccaacacatgtgattacattcaattaattcattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 737
Target Start/End: Complemental strand, 40141340 - 40141299
Alignment:
Q  696 cgacaccaacacatgtgattaaattcaattaattcgttttct 737  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  40141340 cgacaccaacacatgtggttaaattcaattaattcattttct 40141299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 747
Target Start/End: Complemental strand, 15086757 - 15086706
Alignment:
Q  696 cgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 747  Q
    |||||||||||||||||||||  ||||| ||||||  |||||||||||||||    
T  15086757 cgacaccaacacatgtgattacgttcaaataattcactttctcaaattatta 15086706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 755
Target Start/End: Original strand, 42370145 - 42370207
Alignment:
Q  692 aacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgcc 755  Q
    ||||||||||||||||||||||||| ||| ||| ||||| |||| ||||||| ||| |||||||    
T  42370145 aacacgacaccaacacatgtgattacatttaatcaattcatttt-tcaaatttttaccagtgcc 42370207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 726
Target Start/End: Complemental strand, 17535683 - 17535650
Alignment:
Q  693 acacgacaccaacacatgtgattaaattcaatta 726  Q
    |||||||||||||||||||||||| |||||||||    
T  17535683 acacgacaccaacacatgtgattatattcaatta 17535650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Original strand, 29200792 - 29200829
Alignment:
Q  689 accaacacgacaccaacacatgtgattaaattcaatta 726  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  29200792 accaaaacgacaccaacacatgtgattacattcaatta 29200829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 703 - 747
Target Start/End: Complemental strand, 2796598 - 2796554
Alignment:
Q  703 aacacatgtgattaaattcaattaattcgttttctcaaattatta 747  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  2796598 aacacatgtgattaaattcaattaattcattttctcaaattatta 2796554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 698 - 743
Target Start/End: Original strand, 1386533 - 1386578
Alignment:
Q  698 acaccaacacatgtgattaaattcaattaattcgttttctcaaatt 743  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||    
T  1386533 acaccaacacatgtgattatattcaattaattacttttctcaaatt 1386578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 697 - 749
Target Start/End: Complemental strand, 20120003 - 20119951
Alignment:
Q  697 gacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatc 749  Q
    ||||| |||||||||||||| ||| ||||| ||| ||||||||||||||||||    
T  20120003 gacactaacacatgtgattacattaaattatttcattttctcaaattattatc 20119951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 697 - 749
Target Start/End: Original strand, 31277025 - 31277077
Alignment:
Q  697 gacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatc 749  Q
    |||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||    
T  31277025 gacaccaaaatatgtgattacattcaattagttcattttctcaaattattatc 31277077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 711 - 749
Target Start/End: Original strand, 32369927 - 32369965
Alignment:
Q  711 tgattaaattcaattaattcgttttctcaaattattatc 749  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  32369927 tgattacattcaattaattcattttctcaaattattatc 32369965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 645 - 743
Target Start/End: Complemental strand, 4012829 - 4012732
Alignment:
Q  645 tagcaccgacacttgtgattgaagacgtatccggtgtccatcacaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaatt 743  Q
    ||||||||||||||  |||  ||||||| || |||||||| ||||  || ||||||| |||||||||||||| ||||||||||||| |||| |||||||    
T  4012829 tagcaccgacacttccgatgaaagacgtgtctggtgtccaacacatgaa-acgacacaaacacatgtgattatattcaattaattcattttttcaaatt 4012732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 699 - 753
Target Start/End: Original strand, 6294539 - 6294593
Alignment:
Q  699 caccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    |||||||||||| ||||  ||||||||||||| ||||||||||||||||||||||    
T  6294539 caccaacacatgcgattgcattcaattaattcattttctcaaattattatcagtg 6294593  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 639 - 753
Target Start/End: Original strand, 10760787 - 10760898
Alignment:
Q  639 cctctgtagcaccgacacttgtgattgaagacgtatccggtgtccatcacaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctc 738  Q
    |||||||||||||||||| | |||| ||||  || ||||| ||||   |||||||||||||| | |||| |||||||| |||||| ||  || |||||||    
T  10760787 cctctgtagcaccgacacatctgatggaaggggtgtccggcgtccg--acaccaacacgacatcgacacgtgtgattacattcaa-tatgtcattttctc 10760883  T
Q  739 aaattattatcagtg 753  Q
    |||||||||||||||    
T  10760884 aaattattatcagtg 10760898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 693 - 747
Target Start/End: Original strand, 6284658 - 6284712
Alignment:
Q  693 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 747  Q
    |||| |||| ||||||||||||||||||||||||  || ||||||||||||||||    
T  6284658 acactacactaacacatgtgattaaattcaattatgtcattttctcaaattatta 6284712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 703 - 749
Target Start/End: Complemental strand, 34625786 - 34625740
Alignment:
Q  703 aacacatgtgattaaattcaattaattcgttttctcaaattattatc 749  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  34625786 aacatatgtgattacattcaattaattcattttctcaaattattatc 34625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 745
Target Start/End: Complemental strand, 6074570 - 6074523
Alignment:
Q  698 acaccaacacatgtgattaaattcaattaattcgttttctcaaattat 745  Q
    |||||||||||||||||||  ||||| |||||| ||||||||||||||    
T  6074570 acaccaacacatgtgattacgttcaactaattcattttctcaaattat 6074523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 753
Target Start/End: Complemental strand, 8923329 - 8923278
Alignment:
Q  702 caacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    ||||||| ||||||| |||||| ||| ||||||||||||||||||| |||||    
T  8923329 caacacacgtgattacattcaaataactcgttttctcaaattattaccagtg 8923278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 704 - 742
Target Start/End: Original strand, 32577472 - 32577510
Alignment:
Q  704 acacatgtgattaaattcaattaattcgttttctcaaat 742  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  32577472 acacatgtgattacattcaattaattcattttctcaaat 32577510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 703 - 749
Target Start/End: Complemental strand, 34598590 - 34598544
Alignment:
Q  703 aacacatgtgattaaattcaattaattcgttttctcaaattattatc 749  Q
    |||| ||||||||| || |||||||||| ||||||||||||||||||    
T  34598590 aacatatgtgattacatccaattaattcattttctcaaattattatc 34598544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 730
Target Start/End: Complemental strand, 24821731 - 24821698
Alignment:
Q  697 gacaccaacacatgtgattaaattcaattaattc 730  Q
    |||||||||||||||||||| |||||||||||||    
T  24821731 gacaccaacacatgtgattacattcaattaattc 24821698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 696 - 753
Target Start/End: Original strand, 46179910 - 46179967
Alignment:
Q  696 cgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||| ||||||||||||    
T  46179910 cgacaccgacacatgtgattatattcaattaatttattttctcaacttattatcagtg 46179967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 687 - 750
Target Start/End: Original strand, 44172881 - 44172944
Alignment:
Q  687 acaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatca 750  Q
    |||||||||| |||| |||||||||||||| ||| |||||  || |||||||||||||||||||    
T  44172881 acaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 744
Target Start/End: Complemental strand, 31837808 - 31837762
Alignment:
Q  698 acaccaacacatgtgattaaattcaattaattcgttttctcaaatta 744  Q
    ||||||||||||| ||||| ||||||||| ||| |||||||||||||    
T  31837808 acaccaacacatgagattacattcaattatttcattttctcaaatta 31837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 752
Target Start/End: Original strand, 7139436 - 7139497
Alignment:
Q  691 caacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagt 752  Q
    |||||||||||| |||||||| | |  ||||||||||||| |||||||||| ||||| ||||    
T  7139436 caacacgacacctacacatgttactgcattcaattaattcattttctcaaaatattaccagt 7139497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 740
Target Start/End: Complemental strand, 22636509 - 22636456
Alignment:
Q  687 acaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaa 740  Q
    ||||| ||||||||||||||||| |||||| ||||||||| || ||||| ||||    
T  22636509 acaccgacacgacaccaacacatttgattacattcaattattttgttttatcaa 22636456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 753
Target Start/End: Complemental strand, 23948443 - 23948394
Alignment:
Q  704 acacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    |||||| |||||| ||||||||||||  |||| |||||||||||||||||    
T  23948443 acacatatgattacattcaattaattgattttttcaaattattatcagtg 23948394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 748
Target Start/End: Complemental strand, 30013263 - 30013202
Alignment:
Q  687 acaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattat 748  Q
    ||||||||| ||||| |||||||||||||| ||| |||||  || |||||||| ||||||||    
T  30013263 acaccaacatgacacaaacacatgtgattatattgaattacgtcattttctcatattattat 30013202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 754
Target Start/End: Original strand, 31808506 - 31808567
Alignment:
Q  693 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgc 754  Q
    |||||||||||||||||||||||| ||| | ||   || |||||||||||||||||| ||||    
T  31808506 acacgacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtgc 31808567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 753
Target Start/End: Original strand, 34399893 - 34399954
Alignment:
Q  693 acacgacaccaacacatgtgattaaattcaattaatt-cgttttctcaaattattatcagtg 753  Q
    |||||||||| |||||| |||||| ||||||| | || | ||||||||||||||||||||||    
T  34399893 acacgacacccacacatatgattacattcaatcatttacattttctcaaattattatcagtg 34399954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 691 - 745
Target Start/End: Original strand, 35198226 - 35198280
Alignment:
Q  691 caacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattat 745  Q
    ||||||||||||  |||||||||||| ||||||||||||| |||||| |||||||    
T  35198226 caacacgacaccgtcacatgtgattacattcaattaattcattttcttaaattat 35198280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 745
Target Start/End: Original strand, 8765409 - 8765450
Alignment:
Q  704 acacatgtgattaaattcaattaattcgttttctcaaattat 745  Q
    ||||||||| ||| |||||||||||||||||||| |||||||    
T  8765409 acacatgtgcttacattcaattaattcgttttcttaaattat 8765450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 753
Target Start/End: Original strand, 28369813 - 28369862
Alignment:
Q  704 acacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 753  Q
    |||||||| |||| ||| | ||||||| ||||||||||||||||||||||    
T  28369813 acacatgttattacatttatttaattcattttctcaaattattatcagtg 28369862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 693 - 747
Target Start/End: Complemental strand, 3066104 - 3066050
Alignment:
Q  693 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 747  Q
    |||||| ||| |||||||| |||| ||||||||||| | ||||||||||||||||    
T  3066104 acacgataccgacacatgttattacattcaattaatccattttctcaaattatta 3066050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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