View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18680_low_2 (Length: 451)
Name: NF18680_low_2
Description: NF18680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18680_low_2 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Complemental strand, 41036792 - 41036357
Alignment:
| Q |
10 |
catcatcatcagtaccaaagtattagnnnnnnnnnntattaaaattgacgagtgttggctctaatttcttgactgttttgctgcttagtgctctatatct |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41036792 |
catcatcatcagtaccaaagtattagaaaaaaaa--tattaaaattgacgagtgttggctctaatttcttgactgttttgctgcttagtgctctatatct |
41036695 |
T |
|
| Q |
110 |
agtactcatccctatcatggaaagtactaataatcttttctttttccggagtcagttgtggtaattagaaagtccatgactagattgaagtgaggaaaat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41036694 |
agtactcatccctatcatggaaagtactaataatcttttctttttccggagtcagttgtggtaattagaaattccatgactagattgaagtgaggaaaat |
41036595 |
T |
|
| Q |
210 |
gtttaatcccaatttacacacatcatcaccacttccactattttctgcattcccttttcatctacgtaccaaagttacacttgtaatattagaagtgtac |
309 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
41036594 |
ggttaatcccaatttacacacatcatcaccacttccactattttctgcattcccttttcatc----taccaaagttacacttgtaatattaaaagtgtac |
41036499 |
T |
|
| Q |
310 |
atatagcttgcacatataaaagccagtaattaatcaaaggagaaattgatgtatgatagcctatatgtttagtttcacttctacactcactattcttgca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
41036498 |
atatagcttgcacatataaaagccagtaattaatcaaaggagaaattgatgtatgatagcctatatgtttagtttcacatctacactcgctattcttgca |
41036399 |
T |
|
| Q |
410 |
ttcatatgccaatcgactgtgatttaacagaaactataaaat |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41036398 |
ttcatatgccaatcgactgtgatttaacagaaactataaaat |
41036357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 41046575 - 41046460
Alignment:
| Q |
95 |
tagtgctctatatctagtactcatccctatcatggaaagtactaataatcttttctttttccggagtcagttgtggtaattagaaagtccatgactagat |
194 |
Q |
| |
|
||||||||||||| | |||| |||||||||||||||||| | || | |||||||| ||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41046575 |
tagtgctctatatttggtacccatccctatcatggaaagaagtaccagtcttttctatttttggagtcagttgtggtaataagaaagtccatgactagat |
41046476 |
T |
|
| Q |
195 |
tgaagtgaggaaaatg |
210 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
41046475 |
tgaattgaagaaaatg |
41046460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 445
Target Start/End: Complemental strand, 41030863 - 41030773
Alignment:
| Q |
358 |
atgtatgatagcctatatgtttagtttcact---tctacactcactattcttgcattcatatgccaatcgactgtgatttaacagaaacta |
445 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| || ||||||||||| || || |||||||||||||| || ||||||||| |||||||| |
|
|
| T |
41030863 |
atgtatgatagcctctatgtttgatttcactagttccacactcactatactcgcgttcatatgccaatcaacagtgatttaatagaaacta |
41030773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University