View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18682_high_1 (Length: 688)

Name: NF18682_high_1
Description: NF18682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18682_high_1
NF18682_high_1
[»] chr7 (1 HSPs)
chr7 (19-678)||(44851248-44851897)


Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 19 - 678
Target Start/End: Original strand, 44851248 - 44851897
Alignment:
Q  19 ccagatcccactgccctctcctccaccacaaatttagctcaacaaccaaaagaatccaaaaccgaaacaaccaaagatctcccagttacttctaaggaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851248 ccagatcccactgccctctcctccaccacaaatttagctcaacaaccaaaagaatccaaaaccgaaacaaccaaagatctcccagttacttctaaggaag 44851347  T
Q  119 aaaaccaagaacagaaacaggtagaagaggagattaacagtaataagagcactgtgagtagtagtgatcaagttacaaatgaagaaaattttcattactt 218  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851348 aaaaccaagaacaaaaacaggtagaagaggagattaacagtaataagagcactgtgagtagtagtgatcaagttacaaatgaagaaaattttcattactt 44851447  T
Q  219 acaatctacaacacactgctcagaggacatcattatagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851448 acaatctacaacacactgctcagaggacatcattatagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctc 44851547  T
Q  319 ttagaggaagagccactctgctatgcacagttaaagaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851548 ttagaggaagagccactctgctatgcacagttaaagaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgt 44851647  T
Q  419 cttcatctattttacactttacgaggagcattttttctgatgaaaggattcctgttgccccttcttgattgattcaagtgnnnnnnnnnnatgtgtctgt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||    
T  44851648 cttcatctattttacactttacgaggagcattttttctgatgaaaggattcctgttgccccttcttgattgatt----------ttttttatgtgtctgt 44851737  T
Q  519 tgtctagaagaatgtaacaaaatgtattgttcatatatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctat 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851738 tgtctagaagaatgtaacaaaatgtattgttcatatatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctat 44851837  T
Q  619 ttcccacctttatttatatccatcccttactgacacgcaatactacgtccctaccctttg 678  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44851838 ttcccacctttatttatatccatcccatactgacacgcaatactacgtccctaccctttg 44851897  T

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