View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18682_high_12 (Length: 329)
Name: NF18682_high_12
Description: NF18682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18682_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 37960606 - 37960305
Alignment:
| Q |
20 |
agcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960606 |
agcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttataccgtggctgtaaagagagatgagttaattggaaaaaatgggattg |
37960507 |
T |
|
| Q |
120 |
tttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaa |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960506 |
tttcggcttcaattggtatcgaaaagaagataagacatttaaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaa |
37960407 |
T |
|
| Q |
220 |
acctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatgcagttcat |
319 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37960406 |
acctggtaagtctgtaactgtggttgctggttcaccgaaattggctgtttatgagacagattttgggtgggggaagcctaagaaatctgatgctgttcat |
37960307 |
T |
|
| Q |
320 |
ct |
321 |
Q |
| |
|
|| |
|
|
| T |
37960306 |
ct |
37960305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 37954613 - 37954496
Alignment:
| Q |
204 |
atagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
37954613 |
atagggaaatgtcaaaacctggtaagtctgttaatgtgattgctggttcaccgaatttggctgtttatgagacagattttggatgggggaagcctaagaa |
37954514 |
T |
|
| Q |
304 |
atctgatgcagttcatct |
321 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37954513 |
atctgatgcagttcatct |
37954496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 315
Target Start/End: Original strand, 37907444 - 37907731
Alignment:
| Q |
25 |
tgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcg |
124 |
Q |
| |
|
|||||| |||||| | ||| ||||||||||||||||| |||| ||||||| |||| |||||| || | ||||||| ||| |||| |||| |||||| | |
|
|
| T |
37907444 |
tgaattttcattagctaaatcttattttggaaattgtgttgcctcttataacgtggttgtaaaaaggggtgagttagttgaaaaagatggtattgttgca |
37907543 |
T |
|
| Q |
125 |
gcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctg |
224 |
Q |
| |
|
|| || || |||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||||||||| |||| | | |||||||| |
|
|
| T |
37907544 |
gc---aaatgctatttaaaagaagataagagattttaagagtgatgctttgttagaagctgaaacgttgatacctgattatatggaattattaaaacctg |
37907640 |
T |
|
| Q |
225 |
gtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatgcagt |
315 |
Q |
| |
|
|||| || || ||||||||||| ||||| ||| | | ||||| ||| || |||||||||||||| || || ||||||||||||||||| |
|
|
| T |
37907641 |
gtaactcatttgtagtggttgctgggtcacctaaacttgatgtttgtgagactgattttgggtggggaaaaccaaagaaatctgatgcagt |
37907731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 311
Target Start/End: Original strand, 37915593 - 37915880
Alignment:
| Q |
24 |
gtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttc |
123 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||| |||||||| ||||||||||| | |||||| || | ||||||| |||||||| |||| ||| || |
|
|
| T |
37915593 |
gtgaattttcattatcgaaaacttattttggaaactgtcttgcttcttatactgtagttgtaaataggggtgagttagttggaaaagatggtattcttgt |
37915692 |
T |
|
| Q |
124 |
ggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacct |
223 |
Q |
| |
|
||| ||| || ||||||| |||||||||| |||| |||||| |||| ||||| |||| |||||| |||||| |||||||||||||||| |||||| |
|
|
| T |
37915693 |
ggcggcaaatgctattgaacggaagataagagatttcaagagtgatgccttgttgggagttgaaacgttgatgcctgattatagggaaataataaaacca |
37915792 |
T |
|
| Q |
224 |
ggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatg |
311 |
Q |
| |
|
||||| ||| | | ||||| |||| || || ||| | | ||||||||| || |||||||||||||| || || |||||||| |||| |
|
|
| T |
37915793 |
ggtaactctgttaaaatggtttctgggtcgcctaaacttgatgtttatgagactgattttgggtggggaaaaccaaagaaatccgatg |
37915880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 321
Target Start/End: Original strand, 3783743 - 3784035
Alignment:
| Q |
32 |
tcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaa |
131 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| | | | ||||| ||||||||| | ||||||| |||||| ||||||||||||| ||||| ||| |
|
|
| T |
3783743 |
tcattacccaaaaattattttggaaattgtcttgccagtaaaattgtggttgtaaagagggctgagttagttggaacaaatgggattgttgcggctgcaa |
3783842 |
T |
|
| Q |
132 |
ttggtattgaaaagaagataagacattttaagag---tcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaa |
228 |
Q |
| |
|
|||||| |||| |||||||||| |||| ||||| | ||||||||||||| || || | || |||||| |||| ||| | |||||||||||||| |
|
|
| T |
3783843 |
atggtatcgaaaggaagataagagatttcaagagtgataatgctttgttaggtcctaaatggtggacttctgatcatagtgaattatcaaaacctggtaa |
3783942 |
T |
|
| Q |
229 |
gtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatgcagttcatct |
321 |
Q |
| |
|
|||| | | ||||||| ||||| ||||| | ||||||||| || || || ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3783943 |
gtctgttgtaggaattgctggctcacctaaatttgatgtttatgagactgacttcgggtgggggaagcctaaaaaatctgatgcagttcatct |
3784035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University