View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18682_high_2 (Length: 589)
Name: NF18682_high_2
Description: NF18682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18682_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 5960705 - 5961000
Alignment:
| Q |
11 |
aagaaaaagctgaagaaaaaacgtttcttaatttggcactacgatttggtgcatatgggtgaggcgaaataagattattttcaaaagaggaatggcagat |
110 |
Q |
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| T |
5960705 |
aagaaaaagctgaagaaaaaacgtttcttaatttggcactacgatttggtgcatatgggtgaggcgaaataagattattttcaaaagaggagtggcagat |
5960804 |
T |
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| Q |
111 |
gttctagaattattgaatcatattataatggtgtctttgagttgggtggttgctcacagtgcaggaaggttgggtttcaattttatagactggtttaata |
210 |
Q |
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| T |
5960805 |
gttctagaattattgaatcatattataatggtgtctttgagttgggtggttgctcacagtgcaggaaggttgggtttcaattttgtagactggtttaata |
5960904 |
T |
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| Q |
211 |
accctttagtttgtcttggttgcattgtctagctttataaccctctagtttgtaatgtggagtaccccttgtacacctattaatggcactttgctt |
306 |
Q |
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| T |
5960905 |
accctttagtttgtcttggttgcattgtctagctttataaccctctagtttgtaacgtggagtaccccttgtacacctattaatggcactttgctt |
5961000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 361 - 576
Target Start/End: Original strand, 5961052 - 5961268
Alignment:
| Q |
361 |
tctctgtctatgaggtgtagcttcgtggaggagcttgatcttataacctcaagggatatagttgccatttgtatcactttaattaataat-aaaatagca |
459 |
Q |
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| T |
5961052 |
tctctgtctatgaggtgtagcttcgtggaggagcttgatcttataacctcaagggatatagttgccatttgtatcactttaattaataataaaaatagca |
5961151 |
T |
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| Q |
460 |
tttgcctccacctttctcttgattctaattattttagcttcnnnnnnnnnnnnnnnnnnnnnnnnntaagatttcttgaactcaatatctctgaatttgt |
559 |
Q |
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| T |
5961152 |
tttgcctccacctttctcttgcttctaattattttagcttctttttgttttttggttgcatttttgtaagatttcttgaactcaatatctctgaatttgt |
5961251 |
T |
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| Q |
560 |
ttgattaagtgcttatt |
576 |
Q |
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| T |
5961252 |
ttgattaagtgcttatt |
5961268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 526 - 576
Target Start/End: Original strand, 5982638 - 5982688
Alignment:
| Q |
526 |
taagatttcttgaactcaatatctctgaatttgtttgattaagtgcttatt |
576 |
Q |
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| T |
5982638 |
taagatttcttgaactcaatatttctatgtttgtttgattaagttcttatt |
5982688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 25293482 - 25293560
Alignment:
| Q |
170 |
tgcaggaaggttgggtttcaattttatagactggtttaataaccctttagtttgtcttggttgcattgtctagctttat |
248 |
Q |
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| T |
25293482 |
tgcacgaaggttgggtttcatttttgtagaccgatttaataaccccctagtttatcttgattacattctctagccttat |
25293560 |
T |
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