View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18682_high_5 (Length: 454)
Name: NF18682_high_5
Description: NF18682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18682_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 93 - 358
Target Start/End: Complemental strand, 48568909 - 48568644
Alignment:
| Q |
93 |
cgcagcaattatgtcaagacaagttcagttctttaaaaaactaacagggattaaggaaatggcctaattaatttgtctagcaaaattgactgaaataata |
192 |
Q |
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| T |
48568909 |
cgcagcaattatgtcaagacaagttcagttctttaaaaaactaacagggattaaggaaatggcctaattaatttgtctagcaaaattgactgaaataata |
48568810 |
T |
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| Q |
193 |
ttagcgttgactattatctaggagacaagatgaggaatggccttccgcctgctcttgcataagtgtatttccaagttagaactggcacatgtatagcatt |
292 |
Q |
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| T |
48568809 |
ttagcgttgactattatctaggagacaagatgaggaatggccttccgcctgctcttgcataagtgtatttccaagttaaaactgacacatgtatagcatt |
48568710 |
T |
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| Q |
293 |
tctaagaagacatccttaaatactgaaggatacatgaaaaattaaacttaaatatcttgataacaa |
358 |
Q |
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| T |
48568709 |
tctaagaatacatccttaaatactgaaggatacatgaaaaattaaacttaaatatcttgataacaa |
48568644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 356 - 454
Target Start/End: Complemental strand, 48568587 - 48568489
Alignment:
| Q |
356 |
caatagaaaaggtaagtgaatatataacaagctaaataacccctgattaagaacatttatataaacaccgagccaaagaaaatggacactttcttactt |
454 |
Q |
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| T |
48568587 |
caatagaaaaggtaagtgaatatataacaagctaaataacccctgattaagaacatttatataaacaccgagccaaagaaaatggacactttcttactt |
48568489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 48569027 - 48568936
Alignment:
| Q |
1 |
cacacaggtttcccgctcggagccccataggtatctccatagagaagaaggtagagtcttctgtc--gagctctttgcagtgacctaaagaa |
90 |
Q |
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| T |
48569027 |
cacacaggtttcccgctcggagccccataggtatctccatagagaagaaggtagagtcttctgtcaagagctctttgcagtgacctaaagaa |
48568936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10822258 - 10822347
Alignment:
| Q |
1 |
cacacaggtttcccgctcggagccccataggtatctccatagagaagaaggtagagtcttctgtc--gagctctttgcagtgacctaaag |
88 |
Q |
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| T |
10822258 |
cacacaggctttccacttggagccccataagcatcaccaaagagaagaaggtaaagtcttctgtcaagagccctttgtagtgacctaaag |
10822347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 36145138 - 36145048
Alignment:
| Q |
1 |
cacacaggtttcccgctcggagccccataggtatctccatagagaagaaggtagagtcttctgtc--gagctctttgcagtgacctaaaga |
89 |
Q |
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| T |
36145138 |
cacacaggctttccacttggagccccataagcatcaccaaagagaagaaggtaaagtcttctatcaagagccctttgtagtgacctaaaga |
36145048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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