View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18682_low_12 (Length: 345)
Name: NF18682_low_12
Description: NF18682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18682_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 19895868 - 19896186
Alignment:
| Q |
18 |
aatgactaaaaacatatttaactc----tatgaacaattaaaattgtatattggtatgtctaaagttgttgattgtaatatgtatttaaaaacgcaataa |
113 |
Q |
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| T |
19895868 |
aatgactaaaaacatatttaa-tcataatattaacgattaaaattgtatattagtatgtctaaagttgttgattgcaatatatatttaaaaacacaataa |
19895966 |
T |
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| Q |
114 |
ataactttatacaagagtgtgatggtgtttattgatttgacaagtcaagaaacacatgtgaaggtagtgatgcatacatttgaactgacctttccaagac |
213 |
Q |
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| T |
19895967 |
ataactttatacaagagagtgatggtgtttattgatttgacaagtcaagaaacacatgtgaaggttgtgatgcatacatttgaactgacctttccaagac |
19896066 |
T |
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| Q |
214 |
cgagtagctaattaagctaatggatggacatatgnnnnnnnnnnnnnnnnnnnnagtcaggataagtgagtgtttctaagttaccttttcaccccttaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19896067 |
cgagtagctaattaagctaatggatggacatatgctctctctcactctcctctcagtcaggataagtgagtgtttctaagtgaccttttcaccccttaaa |
19896166 |
T |
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| Q |
314 |
acggttaacatccgtaccta |
333 |
Q |
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|||||||||||||||||||| |
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| T |
19896167 |
acggttaacatccgtaccta |
19896186 |
T |
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