View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18682_low_18 (Length: 253)
Name: NF18682_low_18
Description: NF18682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18682_low_18 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 10658698 - 10658946
Alignment:
| Q |
5 |
agaagcataggagaagaaacaaaactagatctgcagcataaccaaggagtataaagcgtaaaacatagaagaaaaaacgaaactagatctggatctcgct |
104 |
Q |
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| T |
10658698 |
agaaacatagaagaagaaacaaaactggatctgcagcataacccaggagtataaagcgtaaaacatagaagaaaaaacgaatctggatctggatctcgct |
10658797 |
T |
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| Q |
105 |
tgcggaaaacaaagaataggaaacaaagcgtaaaaggaagcttagatcagtgaaggtcgaaagattggagattcggaggcgcagctgggtttggaaccca |
204 |
Q |
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| T |
10658798 |
tgcggaaaacaaagaagaggaaacaaagcgtaaaaggaagcttagatcagtgaaggtcgaaagattggagattcggaggcgcagctgggtttggaaccca |
10658897 |
T |
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| Q |
205 |
tgagatgagatgagattgtgataccggttcagtaataacaaccaaaacc |
253 |
Q |
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| T |
10658898 |
tgagatgagatgagattgtgatacgggttcagtaataacaaccaaaacc |
10658946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 13309177 - 13309425
Alignment:
| Q |
5 |
agaagcataggagaagaaacaaaactagatctgcagcataaccaaggagtataaagcgtaaaacatagaagaaaaaacgaaactagatctggatctcgct |
104 |
Q |
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|||| ||||| ||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||||||| || || ||||||||||||||| |
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| T |
13309177 |
agaaacatagaagaagaaacaaaattggatctgcagcataacccaggagtataaagcgtaaaacctagaagaaaaaacaaatctggatctggatctcgct |
13309276 |
T |
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| Q |
105 |
tgcggaaaacaaagaataggaaacaaagcgtaaaaggaagcttagatcagtgaaggtcgaaagattggagattcggaggcgcagctgggtttggaaccca |
204 |
Q |
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| T |
13309277 |
tgcggaaaacaaagaagaggaaacaaagcgtaaaatgaaacttagatcagtgaaggtcgaaagattggagattcggaggcgcagttgggtttggaaccca |
13309376 |
T |
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| Q |
205 |
tgagatgagatgagattgtgataccggttcagtaataacaaccaaaacc |
253 |
Q |
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| T |
13309377 |
tgagatgagatgagattgtgatacgggttcagtaataacaaccaaaacc |
13309425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 9899097 - 9898863
Alignment:
| Q |
16 |
agaagaaacaaaactagatctgcagcataaccaaggagtataaagcgtaaaacatagaagaaaaaacgaaactagatctggatctcgcttgcggaaaaca |
115 |
Q |
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| T |
9899097 |
agaagaaacaaaactggatc---agcataacctaggagtataaagcgtaaaacatagaagaaaaaacgaaactggttctggatctcgcttgcggaaaaca |
9899001 |
T |
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| Q |
116 |
aagaataggaaacaaagcgtaaaaggaagcttagatcagtgaaggtcgaaagattggagattcggaggcgcagctgggtttggaacccatgagatgagat |
215 |
Q |
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| T |
9899000 |
aagaagaggaaacaaagcgtaaaaggaagcttagatcagtgaaggtcgaaagattggagattcggaggcgcggttgggtttgaaacccatgagttgagat |
9898901 |
T |
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| Q |
216 |
gagattgtgataccggttcagtaataacaaccaaaacc |
253 |
Q |
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|||| |||||||| |||||||||||||||||||||||| |
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| T |
9898900 |
gagactgtgatacgggttcagtaataacaaccaaaacc |
9898863 |
T |
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