View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18682_low_23 (Length: 236)
Name: NF18682_low_23
Description: NF18682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18682_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 17137215 - 17137419
Alignment:
| Q |
15 |
agcaatcacaggattatcaaggtgaccagcaagaaggataatgcaaacactataccactgttctaaacaaatcattccagatgaaccaagacttagtatt |
114 |
Q |
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| T |
17137215 |
agcaatcacaggattatcaaggtgaccagcaagaaggataatgcaaacactataccactgttctaaacaaatcattccagatgaaccaagacttagtatt |
17137314 |
T |
|
| Q |
115 |
gtaaattcccatagttccctaaatgccatccaagataatccattccatccttctttggaccaaccaatgacataaattactagagcaatagaaaatcccc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17137315 |
gtaaattcccatagttccctaaatgccatccaagataatccattccatccttctttggaccaaccaatgacataaattactagagcaatagaaaatcccc |
17137414 |
T |
|
| Q |
215 |
atcct |
219 |
Q |
| |
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||||| |
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| T |
17137415 |
atcct |
17137419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 17169067 - 17169272
Alignment:
| Q |
14 |
cagcaatcacaggattatcaaggtgaccagcaagaaggataatgcaaacactataccactgttctaaacaaatcattccagatgaaccaagacttagtat |
113 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||| || ||||||| ||||||||||| |||||| |||||||||||||||| ||| | |
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| T |
17169067 |
cagcaatcacaggattatcaagatgaccagcaagaagtataatgcaagcagtataccattgttctaaacagatcattacagatgaaccaagactaagttt |
17169166 |
T |
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| Q |
114 |
tgtaaattcccatagttccctaaatgccatccaagataatccattccatccttctttggaccaaccaatgacataaattactagagcaatagaaaatccc |
213 |
Q |
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||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||| | |||||||||||| | |
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| T |
17169167 |
ggtaaattcccataattctctaaatgccatccaagacaatccattccatccttctttacaccaaccaatggcatagattaccaatgcaatagaaaatatc |
17169266 |
T |
|
| Q |
214 |
catcct |
219 |
Q |
| |
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|||||| |
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| T |
17169267 |
catcct |
17169272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 17150516 - 17150720
Alignment:
| Q |
15 |
agcaatcacaggattatcaaggtgaccagcaagaaggataatgcaaacactataccactgttctaaacaaatcattccagatgaaccaagacttagtatt |
114 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||| | |
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| T |
17150516 |
agcaatcacaggattatcaagatagccagcaagaaggataatgattgtagtataccactgttctaaacaaatcattacagatgaaccaaaacttagctta |
17150615 |
T |
|
| Q |
115 |
gtaaattcccatagttccctaaatgccatccaagataatccattccatccttctttggaccaaccaatgacataaattactagagcaatagaaaatcccc |
214 |
Q |
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||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| | ||||||| | |||||||| |
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| T |
17150616 |
gtaaattcccataattctctaaatgccatccaagacaatccattccatccttctttacaccaaccaatggcataaattagttgagcaattgcaaatcccc |
17150715 |
T |
|
| Q |
215 |
atcct |
219 |
Q |
| |
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||||| |
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|
| T |
17150716 |
atcct |
17150720 |
T |
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