View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18682_low_27 (Length: 202)
Name: NF18682_low_27
Description: NF18682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18682_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 1584083 - 1584205
Alignment:
| Q |
63 |
caaatattatacacttcaatggcaaacatgccaacagtacaaactaatcaaacaaatcacttttgcatttagttgaaagcagaacatatcttgcgaattt |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1584083 |
caaatattatacacttcaatggcaaacatgccaacagtacaaactaatcaataaaaccacatatgcatttagttgaaagcagaacatatcttgcggattt |
1584182 |
T |
|
| Q |
163 |
cgccatcaacaccggtcttcact |
185 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
1584183 |
caccatcaacaccggtcttcact |
1584205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 1593765 - 1593678
Alignment:
| Q |
98 |
agtacaaactaatcaaacaaatcacttttgcatttagttgaaagcagaacatatcttgcgaatttcgccatcaacaccggtcttcact |
185 |
Q |
| |
|
||||||||| |||||| ||| ||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
1593765 |
agtacaaacaaatcaataaaaccacatatgcatttagttgaaagcagaacatatcttgcggatttcaccatcaacaccggtcttcact |
1593678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 1584186 - 1584241
Alignment:
| Q |
12 |
catcatcaccggtcttcactccaatgttgctcatctttaccattgaatttccaaat |
67 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1584186 |
catcaacaccggtcttcactccaatgttgctcatctttaccattgaatttccaaat |
1584241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 1593697 - 1593642
Alignment:
| Q |
12 |
catcatcaccggtcttcactccaatgttgctcatctttaccattgaatttccaaat |
67 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1593697 |
catcaacaccggtcttcactccaatgttgctcatctttaccattgaatttccaaat |
1593642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University